View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17275_high_11 (Length: 496)
Name: NF17275_high_11
Description: NF17275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17275_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 224 - 478
Target Start/End: Complemental strand, 3159501 - 3159247
Alignment:
| Q |
224 |
agtgttccaaaaagtatagttatctatagtttagacctagattagccagatcattttgcacaactattgtcttccttataaacattaaaaataaaaacat |
323 |
Q |
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| T |
3159501 |
agtgttccaaaaagtataattatctatagtttagacctagattagccagatcattttgcagaactattgtcttccttataaacattaaaaataaaaacat |
3159402 |
T |
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| Q |
324 |
tcatattcttacaaagatccaaacattttttctagtggctgcttgttttccaaggcaccaaagatttcttcttaaaagcaagcaccactaaccgagaatc |
423 |
Q |
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| T |
3159401 |
tcatattcttacaaagatccaaacattttttctagtggctgcttgtttaccaaggcaccaaagatttcttcttaaaagcaagcaccactaaccgagaatc |
3159302 |
T |
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| Q |
424 |
agattctatccaaaggttcctccaaccttgctcaacaacaatttctacggctttc |
478 |
Q |
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| T |
3159301 |
agattctatccaaaggttcctccaaccttgctcaacaacaatttctacggctttc |
3159247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 106
Target Start/End: Complemental strand, 3159631 - 3159597
Alignment:
| Q |
72 |
ctaatcaaaagtggacaattgaagaattgcctcac |
106 |
Q |
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| T |
3159631 |
ctaatcaaaagtggacaattgaagaattgcctcac |
3159597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 201
Target Start/End: Complemental strand, 3159528 - 3159499
Alignment:
| Q |
172 |
ttggtataccaagtttgttcctaccaaagt |
201 |
Q |
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| T |
3159528 |
ttggtataccaagtttgttcctaccaaagt |
3159499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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