View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17275_high_13 (Length: 433)
Name: NF17275_high_13
Description: NF17275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17275_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Original strand, 1402631 - 1403030
Alignment:
| Q |
18 |
ggatatgatgagaagaacaacttaccataatacgttgattaggaaactaacattagcccctagtttgcctattagtatattaacttgtacaacccttgtt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1402631 |
ggatatgatgagaagaacaacttaccataatacgttgattaggaaactaacattagcccctagtttgcctattagtatattaacttgtacaacccttgtt |
1402730 |
T |
|
| Q |
118 |
gttctcaaactccgttggttttggttttttaaggatgctaattctcgttataattttccctcactcaaaacactagatttgaaagacatttatcttcatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1402731 |
gttctcaaactccgttggttttggttttttaaggatgctaattctcattataattttccctcactcaaaacactacatttgaaagacatttatcttcatc |
1402830 |
T |
|
| Q |
218 |
atcaacatgaatttacgtttcttctggatgcatgtccacttcttgaagatcttcaactatctaatatacactttgacccttccgctcgtttctcttcttt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1402831 |
atcaacatgaatttacgtttcttctggatgcatgtccacttcttgaagatcttcaactatctaatatacactttgacccttccgctcgtttctcttcttt |
1402930 |
T |
|
| Q |
318 |
atatcgtaaacaacaattaagatgctcaagcttaaaaaggttgaacaaagcagatataacctatcatggttgctattttatggtgaaatcactttcaaat |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1402931 |
atatcgtaaacaacaattaagatgctcaagcttaaaaaggttgaacaaagcagatataaccgatcatggttgctattttatggtgaaatcactttcaaat |
1403030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 57 - 417
Target Start/End: Original strand, 1398975 - 1399335
Alignment:
| Q |
57 |
taggaaactaacattagcccctagtttgcctattagtatattaacttgtacaacccttgttgttctcaaactccgttggttttggttttttaaggatgct |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
1398975 |
taggaaactaacattagcccctagtttgcctattagtatattaacttgtacaacccttgttgttctcaaactccgttggttttggttctttatggatgct |
1399074 |
T |
|
| Q |
157 |
aattctcgttataattttccctcactcaaaacactagatttgaaagacatttatcttcatcatcaacatgaatttacgtttcttctggatgcatgtccac |
256 |
Q |
| |
|
||||||| |||||||||||||||||| || |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1399075 |
aattctcattataattttccctcactaaagacactacatttgaaagacatttaccttcatcatcaacatgaatttacgtttcttctggatgcttgtccac |
1399174 |
T |
|
| Q |
257 |
ttcttgaagatcttcaactatctaatatacactttgacccttccgctcgtttctcttctttatatcgtaaacaacaattaagatgctcaagcttaaaaag |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
1399175 |
ttcttgaagatcttcaactatctaatatacactttggcccttccgctcgtttctcttctctatatcgtaaccaacaattaagcggctcaagcttaaaaag |
1399274 |
T |
|
| Q |
357 |
gttgaacaaagcagatataacctatcatggttgctattttatggtgaaatcactttcaaat |
417 |
Q |
| |
|
|||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1399275 |
gttgaacaaagcagatataaccgaccatgattgctattttatggtgaaatcactttcaaat |
1399335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 102 - 285
Target Start/End: Original strand, 820654 - 820837
Alignment:
| Q |
102 |
ttgtacaacccttgttgttctcaaactccgttggttttggttttttaaggatgctaattctcgttataattttccctcactcaaaacactagatttgaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| || | || || |||| ||||| | |||||| |||||||||||||||||| |||||||| |
|
|
| T |
820654 |
ttgtacaacccttgttgttctcaagctccgttggttttgtttctctaggggtgcttgttctcatcttaatttaccctcactcaaaacactacatttgaaa |
820753 |
T |
|
| Q |
202 |
gacatttatc-ttcatcatcaacatgaatttacgtttcttctggatgcatgtccacttcttgaagatcttcaactatctaatata |
285 |
Q |
| |
|
|||| ||||| || | || ||| | || | | | | ||||| || ||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
820754 |
gaca-ttatctttgaccaacaatgtcaactgatgatgcttctagacgcatgtccagttctagaagatcttcaactatctaatata |
820837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 277
Target Start/End: Complemental strand, 975229 - 975127
Alignment:
| Q |
175 |
ccctcactcaaaacactagatttgaaagacatttatcttcatcatcaacatgaatttacgtttcttctggatgcatgtccacttcttgaagatcttcaac |
274 |
Q |
| |
|
|||||||| ||||| ||| |||||||||| ||||| || |||| |||| ||| |||| | | ||||| |||| ||||||| |||||||||||||||||| |
|
|
| T |
975229 |
ccctcactaaaaaccctacatttgaaagagatttactttgatcagcaacgtgattttatgatgcttctagatggatgtccagttcttgaagatcttcaac |
975130 |
T |
|
| Q |
275 |
tat |
277 |
Q |
| |
|
||| |
|
|
| T |
975129 |
tat |
975127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University