View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17275_high_14 (Length: 423)

Name: NF17275_high_14
Description: NF17275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17275_high_14
NF17275_high_14
[»] chr3 (8 HSPs)
chr3 (1-407)||(47193476-47193882)
chr3 (3-123)||(9792578-9792698)
chr3 (105-343)||(26698512-26698750)
chr3 (105-343)||(26733675-26733913)
chr3 (105-343)||(26736900-26737138)
chr3 (108-300)||(26750879-26751071)
chr3 (96-163)||(47212255-47212322)
chr3 (105-343)||(26713664-26713902)
[»] chr7 (7 HSPs)
chr7 (3-129)||(6609317-6609443)
chr7 (3-129)||(6624678-6624804)
chr7 (52-166)||(21130440-21130554)
chr7 (87-163)||(18658605-18658681)
chr7 (96-163)||(29213017-29213084)
chr7 (112-166)||(21098712-21098766)
chr7 (52-166)||(21123312-21123426)
[»] chr4 (2 HSPs)
chr4 (264-353)||(39132397-39132486)
chr4 (105-166)||(39132235-39132296)
[»] chr1 (1 HSPs)
chr1 (112-149)||(11791111-11791148)
[»] chr2 (1 HSPs)
chr2 (260-296)||(23466619-23466655)


Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 47193476 - 47193882
Alignment:
Q  1 tctatgagtatatagaacatggttctttagcggagaatctatgttctaattcacttgattggaataagaggtttaatgtagctgttggaacagctaaagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193476 tctatgagtatatagaacatggttctttagcggagaatctatgttctaattcacttgattggaataagaggtttaatgtagctgttggaacagctaaagg 47193575  T
Q  101 tttggcttatttacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaatattttacttgacacaaattttcaaccaaaggttgct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193576 tttggcttatttacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaatattttacttgacacaaattttcaaccaaaggttgct 47193675  T
Q  201 gattttggtttatcaaaactattgaatagagatgaacgtgatagttctgctttttcaagaataagagggacaagaggttatatggcacctgaatgggttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193676 gattttggtttatcaaaactattgaatagagatgaacgtgatagttctgctttttcaagaataagagggacaagaggttatatggcacctgaatgggttt 47193775  T
Q  301 ataatcttcgtattacttcaaaagttgatgtttatagttatgggattgttttgcttgaaatggtgagtggaaaaagtccaatggaaattcatagtgttgt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193776 ataatcttcgtattacttcaaaagttgatgtttatagttatgggattgttttgcttgaaatggtgagtggaaaaagtccaatggaaattcatagtgttgt 47193875  T
Q  401 tgataat 407  Q
    |||||||    
T  47193876 tgataat 47193882  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 9792578 - 9792698
Alignment:
Q  3 tatgagtatatagaacatggttctttagcggagaatctatgttctaattcacttgattggaataagaggtttaatgtagctgttggaacagctaaaggtt 102  Q
    ||||||||||| ||||||||||| ||||  ||||||||||||||||||||| |||||||||||||||| |||||  ||| ||||| |||| |||||||||    
T  9792578 tatgagtatatggaacatggttcattagttgagaatctatgttctaattcagttgattggaataagagatttaagatagttgttgcaacaactaaaggtt 9792677  T
Q  103 tggcttatttacatgaagagt 123  Q
    | |||||||||| ||||||||    
T  9792678 tcgcttatttacttgaagagt 9792698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 105 - 343
Target Start/End: Complemental strand, 26698750 - 26698512
Alignment:
Q  105 gcttatttacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaatattttacttgacacaaattttcaaccaaaggttgctgatt 204  Q
    ||||||||||| |||||||||||||| ||| |||| ||||| ||| | || || ||||| ||  |  ||||| |  ||| |||||| ||||| || ||||    
T  26698750 gcttatttacacgaagagtgtttggagtggattttgcattgcgatataaagccacaaaacatacttgttgactcggattatcaacctaaggtagcagatt 26698651  T
Q  205 ttggtttatcaaaactattgaatagagatgaacgtgatagttctgctttttcaagaataagagggacaagaggttatatggcacctgaatgggtttataa 304  Q
    ||||||| || || |||||||||||  |||| | ||||| |||   ||| || || ||  |||||||||||||||| |||||||||||||||||||  ||    
T  26698650 ttggtttgtctaagctattgaataggaatgaccttgataattcaaatttctcgaggattcgagggacaagaggttacatggcacctgaatgggttttcaa 26698551  T
Q  305 tcttcgtattacttcaaaagttgatgtttatagttatgg 343  Q
      | |  |||||||||||||| ||||||||||| |||||    
T  26698550 catgcaaattacttcaaaagtggatgtttatagctatgg 26698512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 105 - 343
Target Start/End: Complemental strand, 26733913 - 26733675
Alignment:
Q  105 gcttatttacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaatattttacttgacacaaattttcaaccaaaggttgctgatt 204  Q
    ||||||||||| |||||||||||||| ||| |||| ||||| ||| | || || ||||| ||  |  ||||| |  ||| |||||| ||||| || ||||    
T  26733913 gcttatttacacgaagagtgtttggagtggattttgcattgcgatataaagccacaaaacatacttgttgactcggattatcaacctaaggtagcagatt 26733814  T
Q  205 ttggtttatcaaaactattgaatagagatgaacgtgatagttctgctttttcaagaataagagggacaagaggttatatggcacctgaatgggtttataa 304  Q
    ||||||| || || |||||||||||  |||| | ||||| |||   ||| || || ||  |||||||||||||||| |||||||||||||||||||  ||    
T  26733813 ttggtttgtctaagctattgaataggaatgaccttgataattcaaatttctcgaggattcgagggacaagaggttacatggcacctgaatgggttttcaa 26733714  T
Q  305 tcttcgtattacttcaaaagttgatgtttatagttatgg 343  Q
      | |  |||||||||||||| ||||||||||| |||||    
T  26733713 catgcaaattacttcaaaagtggatgtttatagctatgg 26733675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 105 - 343
Target Start/End: Complemental strand, 26737138 - 26736900
Alignment:
Q  105 gcttatttacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaatattttacttgacacaaattttcaaccaaaggttgctgatt 204  Q
    |||||||||||||||||||||||||| ||| |||| ||||| ||| | || || ||||| ||  |  ||||| |  ||| || ||| |||||||| ||||    
T  26737138 gcttatttacatgaagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgactctgattatcgacctaaggttgcagatt 26737039  T
Q  205 ttggtttatcaaaactattgaatagagatgaacgtgatagttctgctttttcaagaataagagggacaagaggttatatggcacctgaatgggtttataa 304  Q
    ||||||| || || |||||||| ||  |||| | ||||| |||    || ||||| ||  |||||||| ||||||| |||||||||||||||||||  ||    
T  26737038 ttggtttgtctaagctattgaacaggaatgagcatgataattcaaacttctcaaggattcgagggacacgaggttacatggcacctgaatgggttttcaa 26736939  T
Q  305 tcttcgtattacttcaaaagttgatgtttatagttatgg 343  Q
      | |  || ||||||||||| ||||||||||| |||||    
T  26736938 catgcaaatcacttcaaaagtggatgtttatagctatgg 26736900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 300
Target Start/End: Complemental strand, 26751071 - 26750879
Alignment:
Q  108 tatttacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaatattttacttgacacaaattttcaaccaaaggttgctgattttg 207  Q
    |||||||| ||||| |||||||| ||| |||| ||||| ||| | ||||| ||||| ||  |  ||||| |  |||  ||||| ||||| ||||||||||    
T  26751071 tatttacacgaagaatgtttggagtggattttgcattgcgatataaaaccgcaaaacatacttgttgactccgattaccaaccgaaggtagctgattttg 26750972  T
Q  208 gtttatcaaaactattgaatagagatgaacgtgatagttctgctttttcaagaataagagggacaagaggttatatggcacctgaatgggttt 300  Q
    || | || || ||||||||||| ||||| | ||||| |||   ||| || || ||  |||||||||||||||| |||||||||||||||||||    
T  26750971 gtctgtccaagctattgaatagggatgaccttgataattcaaatttctcgaggattcgagggacaagaggttacatggcacctgaatgggttt 26750879  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 47212322 - 47212255
Alignment:
Q  96 aaaggtttggcttatttacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaa 163  Q
    ||||||||||||||| | ||||||||||||||||| ||| |||| |||||||||||||| || |||||    
T  47212322 aaaggtttggcttatatccatgaagagtgtttggagtggattttgcattgtgatgtgaagccacaaaa 47212255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 105 - 343
Target Start/End: Complemental strand, 26713902 - 26713664
Alignment:
Q  105 gcttatttacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaatattttacttgacacaaattttcaaccaaaggttgctgatt 204  Q
    |||||||||||||||||||||||||| ||| |||| ||||| ||| | || || ||||| ||  |  |||||    ||| || ||| |||||||| ||||    
T  26713902 gcttatttacatgaagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgactatgattatcgacctaaggttgcagatt 26713803  T
Q  205 ttggtttatcaaaactattgaatagagatgaacgtgatagttctgctttttcaagaataagagggacaagaggttatatggcacctgaatgggtttataa 304  Q
    ||||||| || || |||||||| ||  |||| | ||||| |||    || ||||| ||  |||||||| ||||||| |||||||||||||||||||  ||    
T  26713802 ttggtttgtctaagctattgaaaaggaatgagcatgataattcaaacttctcaaggattcgagggacacgaggttacatggcacctgaatgggttttcaa 26713703  T
Q  305 tcttcgtattacttcaaaagttgatgtttatagttatgg 343  Q
      | |  || ||||||||||| ||||||||||| |||||    
T  26713702 catgcaaatcacttcaaaagtggatgtttatagctatgg 26713664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 6e-44; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 6609443 - 6609317
Alignment:
Q  3 tatgagtatatagaacatggttctttagcggagaatctatgttctaattcacttgattggaataagaggtttaatgtagctgttggaacagctaaaggtt 102  Q
    ||||||||||| ||||||||||| ||||  |||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||    
T  6609443 tatgagtatatggaacatggttcattagttgagaatctatgttctaattcacttgattggaataagagatttaatgtagttgttgcaacagctaaaggtt 6609344  T
Q  103 tggcttatttacatgaagagtgtttgg 129  Q
    ||| |||| ||||||||||||||||||    
T  6609343 tggtttatgtacatgaagagtgtttgg 6609317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 6624678 - 6624804
Alignment:
Q  3 tatgagtatatagaacatggttctttagcggagaatctatgttctaattcacttgattggaataagaggtttaatgtagctgttggaacagctaaaggtt 102  Q
    ||||||||||  ||||||||||| ||||  |||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||    
T  6624678 tatgagtatacggaacatggttcattagttgagaatctatgttctaattcacttgattggaataagagatttaatgtagttgttgcaacagctaaaggtt 6624777  T
Q  103 tggcttatttacatgaagagtgtttgg 129  Q
    ||| |||| ||||||||||||||||||    
T  6624778 tggtttatgtacatgaagagtgtttgg 6624804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 52 - 166
Target Start/End: Complemental strand, 21130554 - 21130440
Alignment:
Q  52 cacttgattggaataagaggtttaatgtagctgttggaacagctaaaggtttggcttatttacatgaagagtgtttggaatgggttttacattgtgatgt 151  Q
    |||||||||||| ||| |||| | || | ||| | |||||||||| || ||| || ||| |||||||||| |||||||||||| |||| ||||||||| |    
T  21130554 cacttgattggactaaaaggtatgatattgctttaggaacagctagagttttagcatatctacatgaagaatgtttggaatggattttgcattgtgatat 21130455  T
Q  152 gaaacctcaaaatat 166  Q
     || |||||||||||    
T  21130454 aaagcctcaaaatat 21130440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 18658681 - 18658605
Alignment:
Q  87 ggaacagctaaaggtttggcttatttacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaa 163  Q
    ||||||||||||| | | |||||| |||||||||| |||||||||||| |||| ||||||||| | || ||||||||    
T  18658681 ggaacagctaaagttctagcttatctacatgaagaatgtttggaatggattttgcattgtgatataaagcctcaaaa 18658605  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 29213084 - 29213017
Alignment:
Q  96 aaaggtttggcttatttacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaa 163  Q
    ||||||||||||||| |  |||||||||||||||| ||| |||| |||||||||||||| || |||||    
T  29213084 aaaggtttggcttatatttatgaagagtgtttggagtggattttgcattgtgatgtgaagccacaaaa 29213017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 21098712 - 21098766
Alignment:
Q  112 tacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaatat 166  Q
    |||||||||| |||||||||||| |||||||||||||| | || || ||||||||    
T  21098712 tacatgaagaatgtttggaatggattttacattgtgatataaagccgcaaaatat 21098766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 166
Target Start/End: Complemental strand, 21123426 - 21123312
Alignment:
Q  52 cacttgattggaataagaggtttaatgtagctgttggaacagctaaaggtttggcttatttacatgaagagtgtttggaatgggttttacattgtgatgt 151  Q
    |||||||||||| ||| |||| | || | ||| | |||||||||| || | | |||||| |||||||||| ||| |||| ||| |||| ||||||||| |    
T  21123426 cacttgattggagtaaaaggtatgatattgctttaggaacagctagagttcttgcttatctacatgaagaatgtatggagtggattttgcattgtgatat 21123327  T
Q  152 gaaacctcaaaatat 166  Q
     || |||||||||||    
T  21123326 aaagcctcaaaatat 21123312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 353
Target Start/End: Original strand, 39132397 - 39132486
Alignment:
Q  264 agagggacaagaggttatatggcacctgaatgggtttataatcttcgtattacttcaaaagttgatgtttatagttatgggattgttttg 353  Q
    ||||| |||||||| |||||||| |||||||||||||  ||| | |  || || || ||||| |||||||||||||||||||||||||||    
T  39132397 agaggaacaagaggatatatggctcctgaatgggttttcaatttaccaataacatctaaagtggatgtttatagttatgggattgttttg 39132486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 39132235 - 39132296
Alignment:
Q  105 gcttatttacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaatat 166  Q
    |||||| |||||||||| |||||||| ||| |||||||||||||| | || |||||||||||    
T  39132235 gcttatctacatgaagaatgtttggagtggattttacattgtgatataaagcctcaaaatat 39132296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 11791148 - 11791111
Alignment:
Q  112 tacatgaagagtgtttggaatgggttttacattgtgat 149  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  11791148 tacatgaggagtgtttggaatgggttttgcattgtgat 11791111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 23466655 - 23466619
Alignment:
Q  260 aataagagggacaagaggttatatggcacctgaatgg 296  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  23466655 aataagaggaacaagaggttatatggcaccagaatgg 23466619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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