View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17275_high_2 (Length: 777)
Name: NF17275_high_2
Description: NF17275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17275_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 14 - 528
Target Start/End: Complemental strand, 2014574 - 2014054
Alignment:
| Q |
14 |
attattcttctgaatcatacagcataaaccagattacaatgtcatttgttggtggaagatgattagttgaatttttcacaataattccacctttaaaagc |
113 |
Q |
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| T |
2014574 |
attattcttctgaatcatacagcataaaccagattacaatgtcatttgttggtggaagatgattagttgaatttttcacaataattccacctttaaaagc |
2014475 |
T |
|
| Q |
114 |
atatatataggttcaatttttgtttctctttataactatttgtcatcttcagcactcacattcaaacaaaaactaatacttgtttccagaagagnnnnnn |
213 |
Q |
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| T |
2014474 |
atatatataggttcaatttttgtttctctttataactatttgttatcttcagcactcacattcaaacaaaaactaatacttgtttccagaagagagaaaa |
2014375 |
T |
|
| Q |
214 |
n--cacacaaatttagacatcatcatgtacaacctagtttcaacacaacaagctatgtgaaaaatgtctttcatagacaaagtttaaataatctcatgca |
311 |
Q |
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| T |
2014374 |
aaacacacaaatttagacatcatcatgtacaacctagtttcaacacaacaagctatgtgaaaaatgtctttcatagacaaagtttaaataatctcatcca |
2014275 |
T |
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| Q |
312 |
tatccaccttgatgaacaagaaatatagttaacatcaaggattattcataggcaaaaaacctttctgcaacaagaagtagcaaatctctatattatttgc |
411 |
Q |
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| T |
2014274 |
tatccaccttgatgaacaagaaatatagttaacatcaaggattattcataggca-aaaacctttctgcaacaggaagtagaaaatctctatattatttgc |
2014176 |
T |
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| Q |
412 |
ctaataatttaaagcgaaaaattggagaagggaaattattatgtaa-----taaagtgaaactaatgaccgtttacgattgtgttgaacttcatctgata |
506 |
Q |
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| T |
2014175 |
ctaataatttaaagcgaaaaattggagaagggaaattattatgtaataaattaaagtgaaactaatgaccgtttacgactgtgttgaacttcatctgata |
2014076 |
T |
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| Q |
507 |
attataaaaaagacgttgcaga |
528 |
Q |
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| T |
2014075 |
attataaaaaagacattgcaga |
2014054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 603 - 760
Target Start/End: Complemental strand, 2013988 - 2013833
Alignment:
| Q |
603 |
tgttactttgtactctgcatgcaacttcacaaaactatacaatatttgaacttacatatttaaatacaaaagtggtcggcctctctatataaccaacacc |
702 |
Q |
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| T |
2013988 |
tgttactttgtactctgcatgcaacttcacaaaactatacaatatttgaacttacatatttaaatacaaaagtggtcggcctctctatataaccaacacc |
2013889 |
T |
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| Q |
703 |
tctgatcatttatttttcttcaaattattatcagtgtataagtatcagtgtcgtgtct |
760 |
Q |
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| T |
2013888 |
tctgatcatt--ttttttttcaaattattatctgtgtataagtatcagtgtcgtgtct |
2013833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 40569177 - 40569243
Alignment:
| Q |
17 |
attcttctgaatcatacagcataaaccagattacaatgtcatttgttggtggaagatgattagttga |
83 |
Q |
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| T |
40569177 |
attcttctgaatcatatagcttaaaccagatttcgatgtcattgattggtggaagatgattggttga |
40569243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 40573778 - 40573844
Alignment:
| Q |
17 |
attcttctgaatcatacagcataaaccagattacaatgtcatttgttggtggaagatgattagttga |
83 |
Q |
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|||||| |||||| || ||| ||||||||||| | |||||||| |||||||||||||||||||||| |
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| T |
40573778 |
attcttatgaatcctatagcttaaaccagatttcgatgtcattgattggtggaagatgattagttga |
40573844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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