View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17275_high_21 (Length: 390)
Name: NF17275_high_21
Description: NF17275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17275_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 133 - 375
Target Start/End: Complemental strand, 4090450 - 4090208
Alignment:
| Q |
133 |
tacatctttctcaagctaattataacaactgctagtagtagtgtatattatgttgggaaatcttgcggagtgcctacagctaatgatcaggtccatcaag |
232 |
Q |
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| T |
4090450 |
tacatctttctcaagctaattataacaactgctagtagtagtgtatattatgttgggaaatcttgcggagtgcctacagctaatgatcaggtccatcaag |
4090351 |
T |
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| Q |
233 |
agaccatgacaccgcatccacccaaaacctagaggattaagcatatgagtccccctctcttatatatctttatttaacacattcctagtcaatgtggtac |
332 |
Q |
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| T |
4090350 |
agaccatgacaccgcatccacccaaaacctagaggattaagcatatgagtccccctctcttatatatctttatttaacacattcctagtcaatgtggtac |
4090251 |
T |
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| Q |
333 |
taacaactcatacttaaatttcaatgatatattatatgctatg |
375 |
Q |
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| T |
4090250 |
taacaactcatacttaaatttcaatgatatattatatgctatg |
4090208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 4090569 - 4090484
Alignment:
| Q |
15 |
ctgtgcaacgattgtccttgatggtataccataagaagtcaaagaagcttgatccaaggttcctagtgatcttctgttcattccat |
100 |
Q |
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| T |
4090569 |
ctgtgcaacgattgtccttgatggtataccataaaaagtcaaagaagcttgatccaaggttcctagtgatcttctgttcattccat |
4090484 |
T |
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