View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17275_high_28 (Length: 310)
Name: NF17275_high_28
Description: NF17275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17275_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 14 - 263
Target Start/End: Complemental strand, 54956068 - 54955810
Alignment:
| Q |
14 |
atgaacggaaacaatgcaaatagatctaatctaacgtgttatctagaggactaccaagcgatttctctcacactactcatcgctccgtctcgacaagaga |
113 |
Q |
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| T |
54956068 |
atgaacggaaacaaggcaaatagatctaatctaacgtgttatctagaggactaccaagcgatttctctcacactactcatcgctccgtctcgacaagaga |
54955969 |
T |
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| Q |
114 |
aagttttttatttaataaataaatgatgtatttatagatgg-atacattatttattaaaaggt----------gagcatttgtcaatcactttttaaaga |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||| |||| | ||||||||||||| | |
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| T |
54955968 |
aagttttttatttaataaataaatgatgtatttatagatggaatacattatttagtaaaaggtctttgttaacgagtgtttgccgatcactttttaaata |
54955869 |
T |
|
| Q |
203 |
ttcaaaaaaagaataaattattttatatnnnnnnnntcaaatattttgatttttgatgcat |
263 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
54955868 |
ttcaaaaatagaataaattattttata--gaaaaaatcaaatattttgatttttgatgcat |
54955810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 305
Target Start/End: Original strand, 17651406 - 17651434
Alignment:
| Q |
277 |
tattttaagattcgaagcgaagaagaaaa |
305 |
Q |
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| T |
17651406 |
tattttaagattcgaagcgaagaagaaaa |
17651434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 305
Target Start/End: Complemental strand, 48147329 - 48147301
Alignment:
| Q |
277 |
tattttaagattcgaagcgaagaagaaaa |
305 |
Q |
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| T |
48147329 |
tattttaagattcgaagcgaagaagaaaa |
48147301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 305
Target Start/End: Complemental strand, 18328737 - 18328709
Alignment:
| Q |
277 |
tattttaagattcgaagcgaagaagaaaa |
305 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
18328737 |
tattttaagattcgaagcgaagaagaaaa |
18328709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 305
Target Start/End: Complemental strand, 39239843 - 39239815
Alignment:
| Q |
277 |
tattttaagattcgaagcgaagaagaaaa |
305 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
39239843 |
tattttaagattcgaagcgaagaagaaaa |
39239815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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