View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17275_high_3 (Length: 692)

Name: NF17275_high_3
Description: NF17275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17275_high_3
NF17275_high_3
[»] chr8 (19 HSPs)
chr8 (8-438)||(33957732-33958162)
chr8 (511-673)||(33958242-33958404)
chr8 (511-638)||(33964131-33964260)
chr8 (560-638)||(33979298-33979378)
chr8 (280-370)||(888145-888236)
chr8 (38-127)||(18694211-18694300)
chr8 (38-98)||(45270288-45270348)
chr8 (546-604)||(33985117-33985173)
chr8 (284-416)||(30439399-30439537)
chr8 (280-325)||(157194-157239)
chr8 (284-373)||(36885381-36885470)
chr8 (382-426)||(32133357-32133401)
chr8 (283-326)||(10644693-10644736)
chr8 (283-369)||(36969566-36969652)
chr8 (284-373)||(14707236-14707325)
chr8 (280-326)||(22960307-22960353)
chr8 (534-572)||(33982492-33982530)
chr8 (36-97)||(15657186-15657247)
chr8 (36-97)||(17271972-17272033)
[»] chr3 (11 HSPs)
chr3 (8-226)||(32239164-32239383)
chr3 (38-97)||(5815067-5815126)
chr3 (284-416)||(24095299-24095437)
chr3 (284-373)||(3281609-3281698)
chr3 (9-130)||(20971791-20971912)
chr3 (284-318)||(6999314-6999348)
chr3 (284-416)||(55400039-55400177)
chr3 (9-130)||(3582079-3582200)
chr3 (284-316)||(46019608-46019640)
chr3 (284-316)||(46852025-46852057)
chr3 (284-316)||(51465807-51465839)
[»] chr6 (13 HSPs)
chr6 (39-158)||(24371933-24372051)
chr6 (285-373)||(6856057-6856146)
chr6 (15-130)||(18308182-18308297)
chr6 (15-130)||(33312755-33312870)
chr6 (280-326)||(33656907-33656953)
chr6 (36-97)||(14385187-14385248)
chr6 (9-130)||(3548266-3548388)
chr6 (284-326)||(18141194-18141236)
chr6 (284-318)||(32046842-32046876)
chr6 (284-373)||(34504109-34504198)
chr6 (284-316)||(13143275-13143307)
chr6 (284-316)||(20822762-20822794)
chr6 (284-316)||(35213454-35213486)
[»] chr1 (11 HSPs)
chr1 (280-369)||(41507083-41507172)
chr1 (284-416)||(29154820-29154956)
chr1 (285-369)||(51436664-51436749)
chr1 (280-373)||(6340814-6340909)
chr1 (284-326)||(33358051-33358093)
chr1 (284-416)||(52362522-52362660)
chr1 (284-373)||(50328034-50328123)
chr1 (282-326)||(4629639-4629683)
chr1 (284-316)||(36577305-36577337)
chr1 (284-316)||(40316837-40316869)
chr1 (284-316)||(48326113-48326145)
[»] chr4 (16 HSPs)
chr4 (280-373)||(54802564-54802658)
chr4 (52-131)||(19551648-19551727)
chr4 (9-130)||(39915171-39915292)
chr4 (285-372)||(12799804-12799891)
chr4 (9-124)||(15442928-15443043)
chr4 (284-367)||(14451488-14451571)
chr4 (9-124)||(17939437-17939552)
chr4 (283-326)||(42815541-42815584)
chr4 (283-322)||(52895397-52895436)
chr4 (281-326)||(21392706-21392751)
chr4 (284-373)||(56271449-56271538)
chr4 (284-324)||(1815894-1815934)
chr4 (284-316)||(17683487-17683519)
chr4 (284-316)||(18882868-18882900)
chr4 (284-316)||(22819795-22819827)
chr4 (283-319)||(32696680-32696716)
[»] chr7 (11 HSPs)
chr7 (280-364)||(15565009-15565094)
chr7 (280-369)||(4225845-4225935)
chr7 (284-425)||(11352867-11353013)
chr7 (284-354)||(3062438-3062508)
chr7 (284-326)||(7817772-7817814)
chr7 (280-365)||(23679926-23680012)
chr7 (280-326)||(33775076-33775122)
chr7 (282-370)||(46725697-46725786)
chr7 (283-369)||(6109862-6109949)
chr7 (284-326)||(41458732-41458774)
chr7 (284-316)||(42555710-42555742)
[»] chr2 (16 HSPs)
chr2 (284-416)||(23352800-23352936)
chr2 (280-369)||(17394964-17395054)
chr2 (9-127)||(21152498-21152616)
chr2 (284-416)||(28245768-28245905)
chr2 (38-127)||(15717542-15717631)
chr2 (9-109)||(12101305-12101405)
chr2 (280-326)||(5032060-5032106)
chr2 (42-88)||(10575787-10575833)
chr2 (283-326)||(34134662-34134705)
chr2 (284-318)||(3012745-3012779)
chr2 (284-416)||(5054648-5054786)
chr2 (332-373)||(10711813-10711854)
chr2 (38-127)||(15702232-15702321)
chr2 (284-316)||(6170776-6170808)
chr2 (284-316)||(13765546-13765578)
chr2 (284-316)||(24562910-24562942)
[»] scaffold0062 (3 HSPs)
scaffold0062 (38-127)||(66100-66189)
scaffold0062 (38-127)||(51144-51233)
scaffold0062 (38-127)||(63683-63772)
[»] scaffold0174 (1 HSPs)
scaffold0174 (382-441)||(34791-34850)
[»] scaffold0042 (1 HSPs)
scaffold0042 (281-328)||(10821-10868)
[»] chr5 (13 HSPs)
chr5 (9-124)||(13644300-13644415)
chr5 (382-433)||(33243737-33243788)
chr5 (15-130)||(35340262-35340377)
chr5 (284-326)||(15952938-15952980)
chr5 (284-326)||(41175599-41175641)
chr5 (284-373)||(43441827-43441916)
chr5 (283-326)||(6940041-6940084)
chr5 (283-326)||(18695455-18695498)
chr5 (284-326)||(10649571-10649613)
chr5 (284-369)||(43213952-43214037)
chr5 (284-316)||(8675326-8675358)
chr5 (382-434)||(12718378-12718429)
chr5 (284-316)||(32912184-32912216)
[»] scaffold0532 (1 HSPs)
scaffold0532 (284-325)||(11101-11142)
[»] scaffold0238 (1 HSPs)
scaffold0238 (9-130)||(1322-1443)
[»] scaffold0136 (1 HSPs)
scaffold0136 (284-373)||(38514-38603)


Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 8 - 438
Target Start/End: Original strand, 33957732 - 33958162
Alignment:
Q  8 ataacagtgatggcaaaagagcggtctcctttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcataggctctttta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33957732 ataacagtgatggcaaaagagcggtctcctttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcataggctctttta 33957831  T
Q  108 gattagtcaatgtccaccaaaatttgtcgcatagtatctgaaagccctatttcatgtcgaggcatccaaatctatcagagtaccgacaacactcgcaatt 207  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33957832 gataagtcaatgtccaccaaaatttgtcgcatagtatctgaaagccctatttcatgtcgaggcatccaaatctatcatagtaccgacaacactcgcaatt 33957931  T
Q  208 tccttcgaagctcgttcccacctttgatcattctaatatttatcattctaatgatgggtactannnnnnnnnagatgtgttatttgaacaaccctttggt 307  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||| ||||||||    
T  33957932 tccttcgaagctcgttcccaccattgatcattctaatatttatcattctaatgatgggtactatttttttttagatgtgttatttgaacaatcctttggt 33958031  T
Q  308 tgacaacttatttgacaacttagttttacaaagacaaaataggtattaacaagaaaaccaaagcaaagataagtaaaacataatgtgaatacgcgagaga 407  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||    
T  33958032 tgacaacttatttgacaacttagttttacaaagaaaaaataggtattaacacgaaaaccaaaacaaagataagtaaaacataatgtgaatacgagagaga 33958131  T
Q  408 aagttgtcaacaaaattgtcacaaattcatt 438  Q
    |||||||||| ||||||||||||||||||||    
T  33958132 aagttgtcaaaaaaattgtcacaaattcatt 33958162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 511 - 673
Target Start/End: Original strand, 33958242 - 33958404
Alignment:
Q  511 aagactgagatattgattcatgcaatattgaactgctatgtttggataagactgagatatatattcccatttaaaagtgttttgtttaaccaacacatta 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33958242 aagactgagatattgattcatgcaatattgaactgctatgtttggataagactgagatatatattcccatttaaaagtgttttgtttaaccaacacatta 33958341  T
Q  611 gcttatccactggaataaccttcactttnnnnnnnccttaattattctaatggttgctggaat 673  Q
    ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  33958342 gcttatccactggaataaccttcactttaaaaaaaccttaattattctaatggttgctggaat 33958404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 511 - 638
Target Start/End: Complemental strand, 33964260 - 33964131
Alignment:
Q  511 aagactgagatattgattcatgcaatattgaactgctatgtttggataagactgagatatatattcccattt---aaaagtgttttgtttaaccaacaca 607  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||||    
T  33964260 aagactgagatattgattcatgcaatattgaactcctttgtttggataagactgagatatatattcccatttagaaaaagtgttttgtttaatcaacaca 33964161  T
Q  608 ttagcttatccactggaataaccttcacttt 638  Q
    ||| ||||||| |||||||||||||||||||    
T  33964160 tta-cttatccgctggaataaccttcacttt 33964131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 560 - 638
Target Start/End: Complemental strand, 33979378 - 33979298
Alignment:
Q  560 gactgagatatatattcccatttaaaa---gtgttttgtttaaccaacacattagcttatccactggaataaccttcacttt 638  Q
    |||||||||||||||||||||||||||   ||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  33979378 gactgagatatatattcccatttaaaaaaagtgttttgtttaatcaacacatta-cttatccactggaataaccttcacttt 33979298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 280 - 370
Target Start/End: Original strand, 888145 - 888236
Alignment:
Q  280 agatgtgttatttgaacaaccctttggttgacaacttatttgacaact-tagttttacaaagacaaaataggtattaacaagaaaaccaaag 370  Q
    |||| ||||||||||||||   ||||| |||||||||||||||||||| || ||||| ||||| ||||||| |||| ||| |||||||||||    
T  888145 agatatgttatttgaacaattttttgggtgacaacttatttgacaactataattttataaagaaaaaatagatattgacacgaaaaccaaag 888236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 18694300 - 18694211
Alignment:
Q  38 ttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcataggctcttttagattagtcaatgtccaccaa 127  Q
    |||||| || ||||||||||| |||||||| ||||||| ||||||||||||||| ||||| || || || ||| ||||||  ||||||||    
T  18694300 ttcatactggacttcaaccttgaaggcaaatccttccctttccacaagaatttcgtcatatgccctctttgataagtcaaaatccaccaa 18694211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 45270288 - 45270348
Alignment:
Q  38 ttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcatag 98  Q
    ||||||||| ||||| |||||||||||||| || |||||||| ||||||||||| ||||||    
T  45270288 ttcatattgcacttccaccttaaaggcaaacccctcccgttcaacaagaatttcgtcatag 45270348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 546 - 604
Target Start/End: Complemental strand, 33985173 - 33985117
Alignment:
Q  546 ctatgtttggataagactgagatatatattcccatttaaaagtgttttgtttaaccaac 604  Q
    |||||||||||||||||||| ||| ||  ||||||||||||||| ||||||||||||||    
T  33985173 ctatgtttggataagactgaaatacat--tcccatttaaaagtgatttgtttaaccaac 33985117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 284 - 416
Target Start/End: Original strand, 30439399 - 30439537
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaacttagttttacaaagacaaaataggtattaacaagaaaaccaaagcaa-----agat- 377  Q
    ||||||||||||||||| ||||||||| ||||||| |||||||     |||||||||| |||||  |||||  || ||||| ||||||||     ||||     
T  30439399 gtgttatttgaacaaccatttggttgataacttatgtgacaaccataatttacaaagaaaaaatgagtatttgcacgaaaatcaaagcaatagagagata 30439498  T
Q  378 aagtaaaacataatgtgaatacgcgagagaaagttgtca 416  Q
    |||||||| ||||||||| || | |||||||||||||||    
T  30439499 aagtaaaaaataatgtgagtatgagagagaaagttgtca 30439537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 157239 - 157194
Alignment:
Q  280 agatgtgttatttgaacaaccctttggttgacaacttatttgacaa 325  Q
    ||||||||||||||||||||  |||| |||||||||||||||||||    
T  157239 agatgtgttatttgaacaacaatttgattgacaacttatttgacaa 157194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 284 - 373
Target Start/End: Original strand, 36885381 - 36885470
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaacttagttttacaaagacaaaataggtattaacaagaaaaccaaagcaa 373  Q
    ||||||||||||||||| |||||| ||||||||||  ||||||     |||||||||| ||| |||||||| ||| ||||| ||||||||    
T  36885381 gtgttatttgaacaaccatttggtggacaacttatgggacaaccataatttacaaagaaaaagtaggtattgacacgaaaatcaaagcaa 36885470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 382 - 426
Target Start/End: Complemental strand, 32133401 - 32133357
Alignment:
Q  382 aaaacataatgtgaatacgcgagagaaagttgtcaacaaaattgt 426  Q
    ||||||||||||||||| | |||||||||||||||| ||||||||    
T  32133401 aaaacataatgtgaataagagagagaaagttgtcaaaaaaattgt 32133357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 283 - 326
Target Start/End: Original strand, 10644693 - 10644736
Alignment:
Q  283 tgtgttatttgaacaaccctttggttgacaacttatttgacaac 326  Q
    |||||||||||||||||| |||| | ||||||||||||||||||    
T  10644693 tgtgttatttgaacaaccatttgatagacaacttatttgacaac 10644736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 283 - 369
Target Start/End: Original strand, 36969566 - 36969652
Alignment:
Q  283 tgtgttatttgaacaaccctttggttgacaacttatttgacaa-cttagttttacaaagacaaaataggtattaacaagaaaaccaaa 369  Q
    ||||||||||||||| || |||| ||||||||||||  ||||| | || ||||||||||| || ||| ||||||||| ||||||||||    
T  36969566 tgtgttatttgaacatccatttgtttgacaacttatgcgacaaccatatttttacaaaga-aatatatgtattaacacgaaaaccaaa 36969652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 284 - 373
Target Start/End: Original strand, 14707236 - 14707325
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaa-cttagttttacaaagacaaaataggtattaacaagaaaaccaaagcaa 373  Q
    ||||||||||||||||  |||||| ||||||||||  ||||| | ||  |||||||||| ||| |||||||| ||||||||| ||||||||    
T  14707236 gtgttatttgaacaactatttggtggacaacttatgagacaatcata-atttacaaagaaaaagtaggtattgacaagaaaatcaaagcaa 14707325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 280 - 326
Target Start/End: Original strand, 22960307 - 22960353
Alignment:
Q  280 agatgtgttatttgaacaaccctttggttgacaacttatttgacaac 326  Q
    ||||||||||||| ||||||  |||| ||||||||||||||||||||    
T  22960307 agatgtgttatttaaacaacaatttgattgacaacttatttgacaac 22960353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 534 - 572
Target Start/End: Complemental strand, 33982530 - 33982492
Alignment:
Q  534 aatattgaactgctatgtttggataagactgagatatat 572  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  33982530 aatattgaactcctatgtttgaataagactgagatatat 33982492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 15657186 - 15657247
Alignment:
Q  36 ctttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcata 97  Q
    ||||||||||| ||||| || ||||| ||||| || |||||||| ||||| |||||||||||    
T  15657186 ctttcatattgcacttcgacgttaaaagcaaagccctcccgttcaacaaggatttcatcata 15657247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 17272033 - 17271972
Alignment:
Q  36 ctttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcata 97  Q
    ||||||||||| ||||| || ||||| ||||| || |||||||| ||||| |||||||||||    
T  17272033 ctttcatattgcacttctacgttaaaagcaaacccctcccgttcaacaaggatttcatcata 17271972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 134; Significance: 2e-69; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 32239164 - 32239383
Alignment:
Q  8 ataacagtgatggcaaaagagcggtctcctttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcataggctctttta 107  Q
    ||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  32239164 ataacagtgatggtaaaagagtggtctcctctcatattgtacttcaaccttaaaggtaaaaccttcctgttccacaagaatttcatcataggctctttta 32239263  T
Q  108 gattagtcaatgtccaccaaaatttgtcgcatagtatctgaa--agccctatttcatgtcgaggcatccaaatctatcagagtaccgacaacactcgcaa 205  Q
    ||| |||||||||||||||||| || ||||||||| ||||||  ||||||||||| ||||| |||||| ||||||||| ||||||| ||||||||| |||    
T  32239264 gataagtcaatgtccaccaaaa-ttctcgcatagtgtctgaattagccctatttcgtgtcggggcatctaaatctatcggagtaccaacaacactcacaa 32239362  T
Q  206 tttccttcgaagctcgttccc 226  Q
    |||||||| ||| | ||||||    
T  32239363 tttccttcaaagtttgttccc 32239383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 5815067 - 5815126
Alignment:
Q  38 ttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcata 97  Q
    ||||||||| ||||| |||||||||||||| || |||||||| ||||||||||| |||||    
T  5815067 ttcatattgcacttccaccttaaaggcaaacccctcccgttcaacaagaatttcgtcata 5815126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 284 - 416
Target Start/End: Original strand, 24095299 - 24095437
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaacttagttttacaaagacaaaataggtattaacaagaaaaccaaagcaa-aga-----t 377  Q
    |||||||||||||| || ||||||||||||||| | |||||||     |||||||||| ||| ||||||||  || |||||||||||||| |||          
T  24095299 gtgttatttgaacatccatttggttgacaacttttatgacaaccataatttacaaagaaaaagtaggtatttgcacgaaaaccaaagcaatagagaaata 24095398  T
Q  378 aagtaaaacataatgtgaatacgcgagagaaagttgtca 416  Q
    |||||||| ||||||||| || | |||||||||||||||    
T  24095399 aagtaaaaaataatgtgagtatgagagagaaagttgtca 24095437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 284 - 373
Target Start/End: Original strand, 3281609 - 3281698
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaacttagttttacaaagacaaaataggtattaacaagaaaaccaaagcaa 373  Q
    ||||||||||||||||| |||||||| |||||||  |||||||     |||||||||| |||||||||||| | |  |||||||||||||    
T  3281609 gtgttatttgaacaaccatttggttgtcaacttacatgacaaccataatttacaaagaaaaaataggtatttatacaaaaaccaaagcaa 3281698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 20971791 - 20971912
Alignment:
Q  9 taacagtgatggcaaaagagcggtctcctttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcataggctcttttag 108  Q
    ||||| ||||||||||| || |||||||  |||||||| | ||| ||| | || |||||||| || | ||| |||||||| |||||||| ||| | || |    
T  20971791 taacaatgatggcaaaacagaggtctccgctcatattggatttccaccattaacgcaaaaccatcgcattcaacaagaatctcatcatatgctttcttcg 20971890  T
Q  109 attagtcaatgtccaccaaaat 130  Q
    || | |||||||||||||||||    
T  20971891 ataaatcaatgtccaccaaaat 20971912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 284 - 318
Target Start/End: Complemental strand, 6999348 - 6999314
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttat 318  Q
    ||||||||||||||||| |||||||||||||||||    
T  6999348 gtgttatttgaacaaccatttggttgacaacttat 6999314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 284 - 416
Target Start/End: Complemental strand, 55400177 - 55400039
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaacttagttttacaaagacaaaataggtattaacaagaaaaccaaagcaa-----agat- 377  Q
    ||||||||||||||||| ||||||||||||||| |  ||||||     |||| ||||| ||||| ||||||  || ||||||||||||||     ||||     
T  55400177 gtgttatttgaacaaccatttggttgacaacttttaggacaaccataatttataaagaaaaaattggtatttgcacgaaaaccaaagcaatagagagata 55400078  T
Q  378 aagtaaaacataatgtgaatacgcgagagaaagttgtca 416  Q
    ||||||||  |||||||| || | |||||||||||||||    
T  55400077 aagtaaaaagtaatgtgagtatgagagagaaagttgtca 55400039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 3582079 - 3582200
Alignment:
Q  9 taacagtgatggcaaaagagcggtctcctttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcataggctcttttag 108  Q
    ||||| ||||||||||| || |||||||  |||||||| | ||| ||| | || |||||||| ||   ||| |||||||| |||||||| ||| | || |    
T  3582079 taacaatgatggcaaaacagaggtctccgctcatattggatttccaccatgaacgcaaaaccatcgttttcaacaagaatctcatcatatgctttcttcg 3582178  T
Q  109 attagtcaatgtccaccaaaat 130  Q
    || | |||||||||||||||||    
T  3582179 ataaatcaatgtccaccaaaat 3582200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 46019640 - 46019608
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaactt 316  Q
    ||||||||||||||||| |||||||||||||||    
T  46019640 gtgttatttgaacaaccatttggttgacaactt 46019608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 284 - 316
Target Start/End: Original strand, 46852025 - 46852057
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaactt 316  Q
    ||||||||||||||||| |||||||||||||||    
T  46852025 gtgttatttgaacaaccatttggttgacaactt 46852057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 284 - 316
Target Start/End: Original strand, 51465807 - 51465839
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaactt 316  Q
    ||||||||||||||||| |||||||||||||||    
T  51465807 gtgttatttgaacaaccatttggttgacaactt 51465839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 39 - 158
Target Start/End: Complemental strand, 24372051 - 24371933
Alignment:
Q  39 tcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcataggctcttttagattagtcaatgtccaccaaaatttgtcgca 138  Q
    |||||||| ||||||| ||||||||||||||  ||||||||||||||||||||||||| ||| || |||||  ||||||||||||||||||||| | |||    
T  24372051 tcatattggacttcaaacttaaaggcaaaacggtcccgttccacaagaatttcatcatcggccctcttagacaagtcaatgtccaccaaaatttat-gca 24371953  T
Q  139 tagtatctgaaagccctatt 158  Q
    || | |||||| ||||||||    
T  24371952 taatgtctgaaggccctatt 24371933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 285 - 373
Target Start/End: Original strand, 6856057 - 6856146
Alignment:
Q  285 tgttatttgaacaaccctttggttgacaacttatttgac-aacttagttttacaaagacaaaataggtattaacaagaaaaccaaagcaa 373  Q
    |||||||||||||||| |||||||||||| ||||  ||| ||| ||| |||| ||||| ||||||||||||  |||||||| ||||||||    
T  6856057 tgttatttgaacaaccatttggttgacaatttatgagacaaacatagatttataaagaaaaaataggtattggcaagaaaatcaaagcaa 6856146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 18308182 - 18308297
Alignment:
Q  15 tgatggcaaaagagcggtctcctttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcataggctcttttagattagt 114  Q
    ||||||||||| |  |||||||  || ||||||| ||| ||| | || |||||||| || |||||||||||||  |||||||| ||| | || ||| |||    
T  18308182 tgatggcaaaacaaaggtctccgctcgtattgtatttccaccatgaacgcaaaaccatcacgttccacaagaacctcatcatatgctttcttcgataagt 18308281  T
Q  115 caatgtccaccaaaat 130  Q
    ||||||||||||||||    
T  18308282 caatgtccaccaaaat 18308297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 33312870 - 33312755
Alignment:
Q  15 tgatggcaaaagagcggtctcctttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcataggctcttttagattagt 114  Q
    ||||||||||| |  |||||||  || ||||||| ||| ||| | || |||||||| || |||||||||||||  |||||||| ||| | || ||| |||    
T  33312870 tgatggcaaaacaaaggtctccgctcgtattgtatttccaccatgaacgcaaaaccatcacgttccacaagaacctcatcatatgctttcttcgataagt 33312771  T
Q  115 caatgtccaccaaaat 130  Q
    ||||||||||||||||    
T  33312770 caatgtccaccaaaat 33312755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 280 - 326
Target Start/End: Complemental strand, 33656953 - 33656907
Alignment:
Q  280 agatgtgttatttgaacaaccctttggttgacaacttatttgacaac 326  Q
    ||||||||||||||||||||| |||| ||||||| ||||||||||||    
T  33656953 agatgtgttatttgaacaaccatttgattgacaatttatttgacaac 33656907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 14385187 - 14385248
Alignment:
Q  36 ctttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcata 97  Q
    ||||||||||| ||||| || ||||| |||||||| |||||||| ||||| |||||||||||    
T  14385187 ctttcatattgcacttctacgttaaaagcaaaaccctcccgttcaacaaggatttcatcata 14385248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 3548266 - 3548388
Alignment:
Q  9 taacagtgatggcaaaagagcggtctcctttcatattgtacttcaacct-taaaggcaaaaccttcccgttccacaagaatttcatcataggctctttta 107  Q
    ||||| ||||||||||| || |||||||  |||||||| | ||| |||  | || |||||||| || ||||| |||||||| |||||||| ||| | ||     
T  3548266 taacaatgatggcaaaatagaggtctccactcatattggatttccacccatgaacgcaaaaccatcgcgttcaacaagaatctcatcatatgctttcttc 3548365  T
Q  108 gattagtcaatgtccaccaaaat 130  Q
    ||| | |||||||||||||||||    
T  3548366 gataaatcaatgtccaccaaaat 3548388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 284 - 326
Target Start/End: Original strand, 18141194 - 18141236
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaac 326  Q
    ||||||||||||||||| ||||||||||||||| | |||||||    
T  18141194 gtgttatttgaacaaccatttggttgacaacttttgtgacaac 18141236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 284 - 318
Target Start/End: Complemental strand, 32046876 - 32046842
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttat 318  Q
    ||||||||||||||||| |||||||||||||||||    
T  32046876 gtgttatttgaacaaccatttggttgacaacttat 32046842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 284 - 373
Target Start/End: Complemental strand, 34504198 - 34504109
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaa-cttagttttacaaagacaaaataggtattaacaagaaaaccaaagcaa 373  Q
    |||||||||||||||||  || | |||||||||||||||||| | || ||||||||||| ||||| |||||| ||| | |||||| |||||    
T  34504198 gtgttatttgaacaaccaatttggtgacaacttatttgacaatcata-ttttacaaagaaaaaattggtattgacacggaaaccatagcaa 34504109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 284 - 316
Target Start/End: Original strand, 13143275 - 13143307
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaactt 316  Q
    ||||||||||||||||| |||||||||||||||    
T  13143275 gtgttatttgaacaaccatttggttgacaactt 13143307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 284 - 316
Target Start/End: Original strand, 20822762 - 20822794
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaactt 316  Q
    ||||||||||||||||| |||||||||||||||    
T  20822762 gtgttatttgaacaaccatttggttgacaactt 20822794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 284 - 316
Target Start/End: Original strand, 35213454 - 35213486
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaactt 316  Q
    ||||||||||||||||| |||||||||||||||    
T  35213454 gtgttatttgaacaaccatttggttgacaactt 35213486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 280 - 369
Target Start/End: Original strand, 41507083 - 41507172
Alignment:
Q  280 agatgtgttatttgaacaaccctttggttgacaacttatttgacaacttagttttacaaagacaaaataggtattaacaagaaaaccaaa 369  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    |||||||||| ||| |||||||| ||| ||||||||||    
T  41507083 agatgtgttatttgaacaaccatttggttgacaacttatttgacaactataatttacaaagaaaaagtaggtattgacatgaaaaccaaa 41507172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 284 - 416
Target Start/End: Complemental strand, 29154956 - 29154820
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaacttagttttacaaagacaaaataggtattaacaagaaaaccaaagcaa---aga-taa 379  Q
    ||||||||||||||||| |||||||||||||||||  ||||||     |||||||||| ||  ||||||||  || |||||||||| |||   ||| |||    
T  29154956 gtgttatttgaacaaccatttggttgacaacttatgggacaacgataatttacaaagaaaacgtaggtatttgcacgaaaaccaaaacaatatagagtaa 29154857  T
Q  380 gtaaaacataatgtgaatacgcgagagaaagttgtca 416  Q
    |||||| ||||||||| || | |||||||||||||||    
T  29154856 gtaaaaaataatgtgagtatgagagagaaagttgtca 29154820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 285 - 369
Target Start/End: Original strand, 51436664 - 51436749
Alignment:
Q  285 tgttatttgaacaaccctttggttgacaacttatttgacaa-cttagttttacaaagacaaaataggtattaacaagaaaaccaaa 369  Q
    ||||||||||||||   ||||||||||||||||| |||||| | ||| |||||||||| ||| |||||||| ||| ||||||||||    
T  51436664 tgttatttgaacaataatttggttgacaacttatatgacaaccatagatttacaaagaaaaagtaggtattgacatgaaaaccaaa 51436749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 373
Target Start/End: Complemental strand, 6340909 - 6340814
Alignment:
Q  280 agatgtgttatttgaacaac-cctttggttgacaacttatttgacaa-cttagttttacaaagacaaaataggtattaacaagaaaaccaaagcaa 373  Q
    ||||||||||||||||||||   ||| | |||||||||||||||||| | |||||||| ||||| ||||||| |||| ||| ||||| ||||||||    
T  6340909 agatgtgttatttgaacaacttttttagatgacaacttatttgacaaccatagttttataaagaaaaaatagatattgacacgaaaatcaaagcaa 6340814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 284 - 326
Target Start/End: Original strand, 33358051 - 33358093
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaac 326  Q
    ||||||||||||||||| ||||||||||||||||| |||||||    
T  33358051 gtgttatttgaacaaccatttggttgacaacttatgtgacaac 33358093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 284 - 416
Target Start/End: Complemental strand, 52362660 - 52362522
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaacttagttttacaaagacaaaataggtattaacaagaaaaccaaagcaa-----agat- 377  Q
    ||||||||||||||||| ||||||||||||||| |  ||||||     |||| ||||| ||| | ||||||  || ||||||||||||||     ||||     
T  52362660 gtgttatttgaacaaccatttggttgacaacttttaggacaaccataatttataaagaaaaagttggtatttgcacgaaaaccaaagcaatagagagata 52362561  T
Q  378 aagtaaaacataatgtgaatacgcgagagaaagttgtca 416  Q
    |||||||| ||||||||| || | |||||||||||||||    
T  52362560 aagtaaaaaataatgtgagtatgagagagaaagttgtca 52362522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 373
Target Start/End: Original strand, 50328034 - 50328123
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaacttagttttacaaagacaaaataggtattaacaagaaaaccaaagcaa 373  Q
    ||||||||||||||||| ||||||||||||||| |  ||||||     |||||||||| ||| | ||||||  || ||||||||||||||    
T  50328034 gtgttatttgaacaaccatttggttgacaacttttgggacaaccataatttacaaagaaaaagttggtatttgcacgaaaaccaaagcaa 50328123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 4629639 - 4629683
Alignment:
Q  282 atgtgttatttgaacaaccctttggttgacaacttatttgacaac 326  Q
    ||||||||||||||||||  || | ||||||||||||||||||||    
T  4629639 atgtgttatttgaacaactattagattgacaacttatttgacaac 4629683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 284 - 316
Target Start/End: Original strand, 36577305 - 36577337
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaactt 316  Q
    ||||||||||||||||| |||||||||||||||    
T  36577305 gtgttatttgaacaaccatttggttgacaactt 36577337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 284 - 316
Target Start/End: Original strand, 40316837 - 40316869
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaactt 316  Q
    ||||||||||||||||| |||||||||||||||    
T  40316837 gtgttatttgaacaaccatttggttgacaactt 40316869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 48326145 - 48326113
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaactt 316  Q
    ||||||||||||||||| |||||||||||||||    
T  48326145 gtgttatttgaacaaccatttggttgacaactt 48326113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 7e-20; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 280 - 373
Target Start/End: Original strand, 54802564 - 54802658
Alignment:
Q  280 agatgtgttatttgaacaaccctttggttgacaacttatttgacaact-tagttttacaaagacaaaataggtattaacaagaaaaccaaagcaa 373  Q
    ||||||||||||||||||||  ||||| |||||||||||||||||||| |||||||| ||||| |||||||||||| ||| |||||  |||||||    
T  54802564 agatgtgttatttgaacaactttttgggtgacaacttatttgacaactatagttttataaagaaaaaataggtattgacacgaaaattaaagcaa 54802658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 19551727 - 19551648
Alignment:
Q  52 caaccttaaaggcaaaaccttcccgttccacaagaatttcatcataggctcttttagattagtcaatgtccaccaaaatt 131  Q
    ||||| |||||| |||||| ||| |||||||||||||||| ||||| ||||| |||||| | |||||||| |||||||||    
T  19551727 caaccataaaggaaaaaccgtcctgttccacaagaatttcgtcataagctctcttagataaatcaatgtcaaccaaaatt 19551648  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 39915171 - 39915292
Alignment:
Q  9 taacagtgatggcaaaagagcggtctcctttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcataggctcttttag 108  Q
    ||||| ||||||||||| || |||||||  |||||||| ||||| ||| | || |||||||| || ||||| |||||||| |||||||| ||| | || |    
T  39915171 taacaatgatggcaaaacagaggtctccgctcatattggacttccaccatgaacgcaaaaccatcgcgttcaacaagaatctcatcatatgctttcttcg 39915270  T
Q  109 attagtcaatgtccaccaaaat 130  Q
    || | |||||||| ||||||||    
T  39915271 ataaatcaatgtctaccaaaat 39915292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 285 - 372
Target Start/End: Complemental strand, 12799891 - 12799804
Alignment:
Q  285 tgttatttgaacaaccctttggttgacaacttatttgacaa-cttagttttacaaagacaaaataggtattaacaagaaaaccaaagca 372  Q
    |||||||||||||||| ||||||| ||||||||| |||||| | ||  |||||||||| |||||||||||| ||| ||||| |||||||    
T  12799891 tgttatttgaacaaccatttggttaacaacttatgtgacaatcata-atttacaaagaaaaaataggtatttacacgaaaatcaaagca 12799804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 15442928 - 15443043
Alignment:
Q  9 taacagtgatggcaaaagagcggtctcctttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcataggctcttttag 108  Q
    ||||| ||||||||||| |  ||||||| |||||||||||| || ||| | || |||||||| || ||||||||||| |  |||||||| ||| | ||||    
T  15442928 taacaatgatggcaaaacaaaggtctccattcatattgtacctccaccatgaacgcaaaaccatcacgttccacaaggacctcatcatatgctttcttag 15443027  T
Q  109 attagtcaatgtccac 124  Q
    || | |||||||||||    
T  15443028 ataaatcaatgtccac 15443043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 367
Target Start/End: Complemental strand, 14451571 - 14451488
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaacttagttttacaaagacaaaataggtattaacaagaaaacca 367  Q
    |||||||||||||||||  || | |||||||||||||||||||    ||||||||||| ||||  |||||| ||| ||||||||    
T  14451571 gtgttatttgaacaaccaatttggtgacaacttatttgacaaccatattttacaaagaaaaaagtggtattgacacgaaaacca 14451488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 17939552 - 17939437
Alignment:
Q  9 taacagtgatggcaaaagagcggtctcctttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcataggctcttttag 108  Q
    ||||| ||||||||||| |  ||||||| |||||||||||| || ||| | || | |||||| || ||||||||||| |  |||||||| ||| | ||||    
T  17939552 taacaatgatggcaaaacaaaggtctccgttcatattgtacctccaccatgaacggaaaaccatcacgttccacaaggacctcatcatatgctttcttag 17939453  T
Q  109 attagtcaatgtccac 124  Q
    || | |||||||||||    
T  17939452 ataaatcaatgtccac 17939437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 42815584 - 42815541
Alignment:
Q  283 tgtgttatttgaacaaccctttggttgacaacttatttgacaac 326  Q
    |||||||||||||||||| |||| | ||||||||||||||||||    
T  42815584 tgtgttatttgaacaaccatttgatagacaacttatttgacaac 42815541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 283 - 322
Target Start/End: Complemental strand, 52895436 - 52895397
Alignment:
Q  283 tgtgttatttgaacaaccctttggttgacaacttatttga 322  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  52895436 tgtgttatttgaacaaccatttgattgacaacttatttga 52895397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 326
Target Start/End: Complemental strand, 21392751 - 21392706
Alignment:
Q  281 gatgtgttatttgaacaaccctttggttgacaacttatttgacaac 326  Q
    |||||||||||| ||||||| ||| |||||||| ||||||||||||    
T  21392751 gatgtgttatttaaacaaccattttgttgacaatttatttgacaac 21392706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 373
Target Start/End: Complemental strand, 56271538 - 56271449
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaacttagttttacaaagacaaaataggtattaacaagaaaaccaaagcaa 373  Q
    |||||||||||||| || |||| |||||||||| | |||||||     |||||||||| ||| ||||||||  || ||||||||||||||    
T  56271538 gtgttatttgaacatccatttgtttgacaacttttatgacaaccataatttacaaagaaaaagtaggtatttgcacgaaaaccaaagcaa 56271449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 1815894 - 1815934
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgaca 324  Q
    ||||||||||||||||| | ||||||||||||||| |||||    
T  1815894 gtgttatttgaacaaccatctggttgacaacttatgtgaca 1815934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 17683519 - 17683487
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaactt 316  Q
    ||||||||||||||||| |||||||||||||||    
T  17683519 gtgttatttgaacaaccatttggttgacaactt 17683487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 284 - 316
Target Start/End: Original strand, 18882868 - 18882900
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaactt 316  Q
    ||||||||||||||||| |||||||||||||||    
T  18882868 gtgttatttgaacaaccatttggttgacaactt 18882900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 22819827 - 22819795
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaactt 316  Q
    ||||||||||||||||| |||||||||||||||    
T  22819827 gtgttatttgaacaaccatttggttgacaactt 22819795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 283 - 319
Target Start/End: Original strand, 32696680 - 32696716
Alignment:
Q  283 tgtgttatttgaacaaccctttggttgacaacttatt 319  Q
    |||||||||||||||||| |||||||||||| |||||    
T  32696680 tgtgttatttgaacaaccatttggttgacaatttatt 32696716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 280 - 364
Target Start/End: Complemental strand, 15565094 - 15565009
Alignment:
Q  280 agatgtgttatttgaacaaccctttggttgacaacttatttgacaa-cttagttttacaaagacaaaataggtattaacaagaaaa 364  Q
    |||| |||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| ||| |||||||| ||| |||||    
T  15565094 agatatgttatttaaacaaccatttggttgacaacttatttgacaaccttagttttacaaagaaaaagtaggtattgacacgaaaa 15565009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 280 - 369
Target Start/End: Complemental strand, 4225935 - 4225845
Alignment:
Q  280 agatgtgttatttgaacaaccctttggttgacaacttatttgacaa-cttagttttacaaagacaaaataggtattaacaagaaaaccaaa 369  Q
    |||||||||||||||||||   ||| | |||||||||||||||||| | |||||||| ||||| ||| |||||||| ||| ||||||||||    
T  4225935 agatgtgttatttgaacaattttttaggtgacaacttatttgacaaccatagttttataaagaaaaagtaggtattgacacgaaaaccaaa 4225845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 284 - 425
Target Start/End: Original strand, 11352867 - 11353013
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaacttagttttacaaagacaaaataggtattaacaagaaaaccaaagcaa-----agat- 377  Q
    ||||||||||||||||| ||||||||||||||| |  ||||||     |||||||||| ||| | |||||| ||| ||||||||||||||     ||||     
T  11352867 gtgttatttgaacaaccatttggttgacaacttttgggacaaccataatttacaaagaaaaatttggtatttacacgaaaaccaaagcaataaagagata 11352966  T
Q  378 aagtaaaacataatgtgaatacgcgagagaaagttgtcaacaaaattg 425  Q
    ||||||||  |||||||| || | |||||||||||||| |||||||||    
T  11352967 aagtaaaaagtaatgtgagtatgagagagaaagttgtc-acaaaattg 11353013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 284 - 354
Target Start/End: Complemental strand, 3062508 - 3062438
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaacttagttttacaaagacaaaataggtatt 354  Q
    ||||||||||||||||| ||||||||||||||||  |||||||     |||||||||| ||||||||||||    
T  3062508 gtgttatttgaacaaccatttggttgacaacttacatgacaaccataatttacaaagaaaaaataggtatt 3062438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 284 - 326
Target Start/End: Complemental strand, 7817814 - 7817772
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaac 326  Q
    ||||||||||||||||| ||||||||||||||||| |||||||    
T  7817814 gtgttatttgaacaaccatttggttgacaacttatgtgacaac 7817772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 280 - 365
Target Start/End: Original strand, 23679926 - 23680012
Alignment:
Q  280 agatgtgttatttgaacaaccctttggttgacaacttatttgacaa-cttagttttacaaagacaaaataggtattaacaagaaaac 365  Q
    |||||||| |||||||| ||| ||||||||||||||| |||||||| | | | |||||||||| ||| ||||||| |||| ||||||    
T  23679926 agatgtgtcatttgaaccaccatttggttgacaacttctttgacaaccattgatttacaaagaaaaagtaggtataaacacgaaaac 23680012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 280 - 326
Target Start/End: Complemental strand, 33775122 - 33775076
Alignment:
Q  280 agatgtgttatttgaacaaccctttggttgacaacttatttgacaac 326  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||||    
T  33775122 agatgtgttatttgaacaatcgtttgattgacaacttatttgacaac 33775076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 282 - 370
Target Start/End: Complemental strand, 46725786 - 46725697
Alignment:
Q  282 atgtgttatttgaacaaccctttggttgacaacttatttgacaac-ttagttttacaaagacaaaataggtattaacaagaaaaccaaag 370  Q
    |||||||||||||| |||  ||| |||||||||||||  |||||| |||| |||||||||| ||||||  |||| ||||| |||||||||    
T  46725786 atgtgttatttgaataactattttgttgacaacttatgagacaactttagatttacaaagaaaaaataaatattgacaaggaaaccaaag 46725697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 283 - 369
Target Start/End: Original strand, 6109862 - 6109949
Alignment:
Q  283 tgtgttatttgaacaaccctttggttgacaacttatttgacaa-cttagttttacaaagacaaaataggtattaacaagaaaaccaaa 369  Q
    ||||| |||||||||| | ||| |||||||||||||| ||||| | ||| |||||||||| ||| || ||||| ||| ||||||||||    
T  6109862 tgtgtgatttgaacaatcattttgttgacaacttattggacaatcatagatttacaaagaaaaattatgtattgacacgaaaaccaaa 6109949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 284 - 326
Target Start/End: Complemental strand, 41458774 - 41458732
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaac 326  Q
    ||||||||||||||||| ||||||||||||||||  |||||||    
T  41458774 gtgttatttgaacaaccatttggttgacaacttacatgacaac 41458732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 42555742 - 42555710
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaactt 316  Q
    ||||||||||||||||| |||||||||||||||    
T  42555742 gtgttatttgaacaaccatttggttgacaactt 42555710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 284 - 416
Target Start/End: Original strand, 23352800 - 23352936
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaacttagttttacaaagacaaaataggtattaacaagaaaaccaaagcaa---agat-aa 379  Q
    ||||||||||||||||| |||||||||||||||||  ||||||     |||||||||| ||| || |||||  || ||||||||||||||   |||| ||    
T  23352800 gtgttatttgaacaaccatttggttgacaacttatgggacaaccataatttacaaagaaaaagtatgtatttgcacgaaaaccaaagcaatagagataaa 23352899  T
Q  380 gtaaaacataatgtgaatacgcgagagaaagttgtca 416  Q
    |||||| ||||||||| || | |||||||||||||||    
T  23352900 gtaaaaaataatgtgagtatgagagagaaagttgtca 23352936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 280 - 369
Target Start/End: Original strand, 17394964 - 17395054
Alignment:
Q  280 agatgtgttatttgaacaaccctttggttgacaacttatttgacaa-cttagttttacaaagacaaaataggtattaacaagaaaaccaaa 369  Q
    ||||||||||||||||||||  ||||| |||||||||||||||||| | |||||||| ||||| ||  |||||||| ||| ||||| ||||    
T  17394964 agatgtgttatttgaacaactttttgggtgacaacttatttgacaaccatagttttataaagaaaacgtaggtattgacacgaaaatcaaa 17395054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 21152616 - 21152498
Alignment:
Q  9 taacagtgatggcaaaagagcggtctcctttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcataggctcttttag 108  Q
    ||||| |||||||| || || ||||  | |||||| || ||||| ||||| |||||||| ||||||| ||||||||||||||| ||||| || || || |    
T  21152616 taacaatgatggcagaaaagaggtcgtcgttcatactggacttccaccttgaaggcaaatccttccctttccacaagaatttcgtcatatgccctctttg 21152517  T
Q  109 attagtcaatgtccaccaa 127  Q
    || ||||||| ||||||||    
T  21152516 ataagtcaatatccaccaa 21152498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 284 - 416
Target Start/End: Complemental strand, 28245905 - 28245768
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaacttagttttacaaagacaaaataggtattaacaagaaaaccaaagcaa-----agat- 377  Q
    ||||||||||||||||| ||||||||||||||| |   ||||| |   |||||||||| ||||||||||||  || ||||||||||||||     ||||     
T  28245905 gtgttatttgaacaaccatttggttgacaacttttgaaacaaccttaatttacaaaga-aaaataggtatttgcacgaaaaccaaagcaatagagagata 28245807  T
Q  378 aagtaaaacataatgtgaatacgcgagagaaagttgtca 416  Q
    |||||||| ||||||||| || | |||||||||||||||    
T  28245806 aagtaaaaaataatgtgagtatgagagagaaagttgtca 28245768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 15717631 - 15717542
Alignment:
Q  38 ttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcataggctcttttagattagtcaatgtccaccaa 127  Q
    |||||| || ||||||||||| |||||||| ||||||| ||||||||||||||| ||||| || || || ||| ||||||  ||||||||    
T  15717631 ttcatactggacttcaaccttgaaggcaaatccttccctttccacaagaatttcgtcatatgccctctttgataagtcaaaatccaccaa 15717542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 12101405 - 12101305
Alignment:
Q  9 taacagtgatggcaaaagagcggtctcctttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcataggctcttttag 108  Q
    ||||||||||||||||| | ||||||||| |||||||| ||||| |||||||| |  || || || || |||||||| || |||||||| ||||| ||||    
T  12101405 taacagtgatggcaaaacaacggtctcctctcatattgcacttccaccttaaaagtgaagccctcacgctccacaaggatctcatcataagctctcttag 12101306  T
Q  109 a 109  Q
    |    
T  12101305 a 12101305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 280 - 326
Target Start/End: Complemental strand, 5032106 - 5032060
Alignment:
Q  280 agatgtgttatttgaacaaccctttggttgacaacttatttgacaac 326  Q
    ||||||||||||||||||||| |||| | ||||||||||||||||||    
T  5032106 agatgtgttatttgaacaaccttttgatagacaacttatttgacaac 5032060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 10575833 - 10575787
Alignment:
Q  42 tattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaat 88  Q
    ||||| |||||||||||||| ||||||||||||| ||||||||||||    
T  10575833 tattgaacttcaaccttaaatgcaaaaccttcccattccacaagaat 10575787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 283 - 326
Target Start/End: Original strand, 34134662 - 34134705
Alignment:
Q  283 tgtgttatttgaacaaccctttggttgacaacttatttgacaac 326  Q
    |||||||||||||||||| |||| | ||||||||||||||||||    
T  34134662 tgtgttatttgaacaaccatttgatagacaacttatttgacaac 34134705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 284 - 318
Target Start/End: Original strand, 3012745 - 3012779
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttat 318  Q
    ||||||||||||||||| |||||||||||||||||    
T  3012745 gtgttatttgaacaaccatttggttgacaacttat 3012779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 284 - 416
Target Start/End: Complemental strand, 5054786 - 5054648
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaacttagttttacaaagacaaaataggtattaacaagaaaaccaaagcaa-----agat- 377  Q
    |||||||||||| |||  ||||||||||||||||| |||||||     |||||||||| ||| ||||||||  || ||||| ||||||||     ||||     
T  5054786 gtgttatttgaataactatttggttgacaacttatgtgacaacaataatttacaaagaaaaagtaggtatttgcacgaaaatcaaagcaatagagagata 5054687  T
Q  378 aagtaaaacataatgtgaatacgcgagagaaagttgtca 416  Q
    |||||| ||||||||||| || | |||| ||||||||||    
T  5054686 aagtaacacataatgtgagtatgagagaaaaagttgtca 5054648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 373
Target Start/End: Complemental strand, 10711854 - 10711813
Alignment:
Q  332 tttacaaagacaaaataggtattaacaagaaaaccaaagcaa 373  Q
    |||||||||| |||||||||||| ||| ||||||||||||||    
T  10711854 tttacaaagaaaaaataggtatttacacgaaaaccaaagcaa 10711813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 15702321 - 15702232
Alignment:
Q  38 ttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcataggctcttttagattagtcaatgtccaccaa 127  Q
    |||||| || ||||||||||| |||||||| ||||||| ||||| ||||||||  ||||| || || || ||| ||||||  ||||||||    
T  15702321 ttcatactggacttcaaccttgaaggcaaatccttccctttccaaaagaattttgtcatatgccctctttgataagtcaaaatccaccaa 15702232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 6170808 - 6170776
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaactt 316  Q
    ||||||||||||||||| |||||||||||||||    
T  6170808 gtgttatttgaacaaccatttggttgacaactt 6170776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 13765578 - 13765546
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaactt 316  Q
    ||||||||||||||||| |||||||||||||||    
T  13765578 gtgttatttgaacaaccatttggttgacaactt 13765546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 284 - 316
Target Start/End: Original strand, 24562910 - 24562942
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaactt 316  Q
    ||||||||||||||||| |||||||||||||||    
T  24562910 gtgttatttgaacaaccatttggttgacaactt 24562942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 66189 - 66100
Alignment:
Q  38 ttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcataggctcttttagattagtcaatgtccaccaa 127  Q
    |||||| || ||||||||||| |||||||| ||||||| ||||||||||||||| ||||| || || || ||| ||||||  ||||||||    
T  66189 ttcatactggacttcaaccttgaaggcaaatccttccctttccacaagaatttcgtcatatgccctctttgataagtcaaaatccaccaa 66100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 51233 - 51144
Alignment:
Q  38 ttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcataggctcttttagattagtcaatgtccaccaa 127  Q
    |||||| || ||||||||||| |||||||| ||||||| ||||| ||||||||  ||||| || || || ||| ||||||  ||||||||    
T  51233 ttcatactggacttcaaccttgaaggcaaatccttccctttccaaaagaattttgtcatatgccctctttgataagtcaaaatccaccaa 51144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 63772 - 63683
Alignment:
Q  38 ttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcataggctcttttagattagtcaatgtccaccaa 127  Q
    |||||| || ||||||||||| |||||||| ||||||| ||||| ||||||||  ||||| || || || ||| ||||||  ||||||||    
T  63772 ttcatactggacttcaaccttgaaggcaaatccttccctttccaaaagaattttgtcatatgccctctttgataagtcaaaatccaccaa 63683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 382 - 441
Target Start/End: Original strand, 34791 - 34850
Alignment:
Q  382 aaaacataatgtgaatacgcgagagaaagttgtcaacaaaattgtcacaaattcattgta 441  Q
    |||||||||||||| || | |||||||||||||||  |||||||||||||||| ||||||    
T  34791 aaaacataatgtgagtatgagagagaaagttgtcataaaaattgtcacaaattaattgta 34850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 281 - 328
Target Start/End: Original strand, 10821 - 10868
Alignment:
Q  281 gatgtgttatttgaacaaccctttggttgacaacttatttgacaactt 328  Q
    |||||||||||||||||||| ||| |||||||| ||||||||||||||    
T  10821 gatgtgttatttgaacaaccatttagttgacaatttatttgacaactt 10868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 13644300 - 13644415
Alignment:
Q  9 taacagtgatggcaaaagagcggtctcctttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcataggctcttttag 108  Q
    ||||| ||||||||||| |  ||||||| |||||||||||| || ||| | || |||||||| || ||||||||||| |  |||||||| ||| | ||||    
T  13644300 taacaatgatggcaaaacaaaggtctccgttcatattgtacctccaccatgaacgcaaaaccatcacgttccacaaggacctcatcatatgctttcttag 13644399  T
Q  109 attagtcaatgtccac 124  Q
    || | |||||||||||    
T  13644400 ataaatcaatgtccac 13644415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 382 - 433
Target Start/End: Original strand, 33243737 - 33243788
Alignment:
Q  382 aaaacataatgtgaatacgcgagagaaagttgtcaacaaaattgtcacaaat 433  Q
    |||| ||||||||| || |||||||||||||||||| |||||||||||||||    
T  33243737 aaaaaataatgtgagtatgcgagagaaagttgtcaaaaaaattgtcacaaat 33243788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 35340377 - 35340262
Alignment:
Q  15 tgatggcaaaagagcggtctcctttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcataggctcttttagattagt 114  Q
    ||||||||||| |  |||||||  || ||||||| ||| ||| | || |||||||| || |||||||||||||  |||||||| ||| | || ||| |||    
T  35340377 tgatggcaaaacaaaggtctccgctcgtattgtatttccaccatgaacgcaaaaccgtcacgttccacaagaacctcatcatatgctttcttcgataagt 35340278  T
Q  115 caatgtccaccaaaat 130  Q
    ||||||||||||||||    
T  35340277 caatgtccaccaaaat 35340262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 284 - 326
Target Start/End: Original strand, 15952938 - 15952980
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaac 326  Q
    ||||||||||||||||| ||||||||||||||||| |||||||    
T  15952938 gtgttatttgaacaaccatttggttgacaacttatgtgacaac 15952980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 284 - 326
Target Start/End: Original strand, 41175599 - 41175641
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaac 326  Q
    ||||||||||||||||| ||||||||||||||||| |||||||    
T  41175599 gtgttatttgaacaaccatttggttgacaacttatgtgacaac 41175641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 284 - 373
Target Start/End: Complemental strand, 43441916 - 43441827
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaacttagttttacaaagacaaaataggtattaacaagaaaaccaaagcaa 373  Q
    ||||||||||||||||| ||||||||||||||| |  ||||||     |||||||||| ||||| ||||||  || ||||||||||||||    
T  43441916 gtgttatttgaacaaccatttggttgacaacttttaagacaaccataatttacaaagaaaaaattggtatttgcacgaaaaccaaagcaa 43441827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 283 - 326
Target Start/End: Original strand, 6940041 - 6940084
Alignment:
Q  283 tgtgttatttgaacaaccctttggttgacaacttatttgacaac 326  Q
    |||||||||||||||||| |||| | ||||||||||||||||||    
T  6940041 tgtgttatttgaacaaccatttgatagacaacttatttgacaac 6940084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 18695498 - 18695455
Alignment:
Q  283 tgtgttatttgaacaaccctttggttgacaacttatttgacaac 326  Q
    |||||||||||||||||| |||| | ||||||||||||||||||    
T  18695498 tgtgttatttgaacaaccatttgatagacaacttatttgacaac 18695455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 284 - 326
Target Start/End: Complemental strand, 10649613 - 10649571
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaac 326  Q
    ||||||||||||||||| ||||||||||||||| | |||||||    
T  10649613 gtgttatttgaacaaccatttggttgacaacttttgtgacaac 10649571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 369
Target Start/End: Original strand, 43213952 - 43214037
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaacttagttttacaaagacaaaataggtattaacaagaaaaccaaa 369  Q
    ||||||||||||||||| ||||||||||||||| |   ||||||    |||| ||||| ||||||||||||  || ||||||||||    
T  43213952 gtgttatttgaacaaccatttggttgacaacttttaaaacaactataatttataaagaaaaaataggtatttgcacgaaaaccaaa 43214037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 284 - 316
Target Start/End: Original strand, 8675326 - 8675358
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaactt 316  Q
    ||||||||||||||||| |||||||||||||||    
T  8675326 gtgttatttgaacaaccatttggttgacaactt 8675358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 382 - 434
Target Start/End: Original strand, 12718378 - 12718429
Alignment:
Q  382 aaaacataatgtgaatacgcgagagaaagttgtcaacaaaattgtcacaaatt 434  Q
    ||||||||||||||||| | |||| ||||||||||| ||| ||||||||||||    
T  12718378 aaaacataatgtgaatatgagagataaagttgtcaa-aaagttgtcacaaatt 12718429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 32912216 - 32912184
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaactt 316  Q
    ||||||||||||||||| |||||||||||||||    
T  32912216 gtgttatttgaacaaccatttggttgacaactt 32912184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 284 - 325
Target Start/End: Complemental strand, 11142 - 11101
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaa 325  Q
    ||||||||||||||||| ||||||||||||||||| ||||||    
T  11142 gtgttatttgaacaaccttttggttgacaacttatgtgacaa 11101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 1322 - 1443
Alignment:
Q  9 taacagtgatggcaaaagagcggtctcctttcatattgtacttcaaccttaaaggcaaaaccttcccgttccacaagaatttcatcataggctcttttag 108  Q
    ||||| ||||||||||| || |||||||  |||||||| | ||| | | | || ||||| || || ||||| |||||||| |||||||| ||| | || |    
T  1322 taacaatgatggcaaaacagaggtctccactcatattggatttccatcatgaacgcaaagccatcgcgttcaacaagaatctcatcatatgctttcttcg 1421  T
Q  109 attagtcaatgtccaccaaaat 130  Q
    || | |||||||||||||||||    
T  1422 ataaatcaatgtccaccaaaat 1443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 373
Target Start/End: Complemental strand, 38603 - 38514
Alignment:
Q  284 gtgttatttgaacaaccctttggttgacaacttatttgacaacttagttttacaaagacaaaataggtattaacaagaaaaccaaagcaa 373  Q
    ||||||||||||||||| ||| ||||||||||| |  |||||||    |||||||||| ||| | ||||||  || ||||||||||||||    
T  38603 gtgttatttgaacaaccatttagttgacaacttttgggacaactataatttacaaagaaaaagttggtattcgcacgaaaaccaaagcaa 38514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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