View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17275_high_34 (Length: 263)
Name: NF17275_high_34
Description: NF17275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17275_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 7 - 256
Target Start/End: Complemental strand, 40633468 - 40633219
Alignment:
| Q |
7 |
aagactattttatacctgcagtgaactcgaaaaccactacgacagtcatgacagcccaaatagcattttggccaatccctttaaagagtggctccaatat |
106 |
Q |
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| T |
40633468 |
aagactattttatacctgcagtgaactcgaaaaccaccacgacagtcatgacagcccaaatagcattttggccaatccctttaaagagtggctccaatat |
40633369 |
T |
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| Q |
107 |
ataaagcaatgatacaagagtaagagataaaccaactttgaatgcatggatcacccttcttggatcatcacatcccaccttccaagtagtcttccaaacc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40633368 |
ataaagcaatgatacaagagtaagagataaaccaactttgaatgcatggatcacccttcttggatcatcacatcccaccttccaagtagtcttccaaacc |
40633269 |
T |
|
| Q |
207 |
aaacaaggaaaccttttaagcctctcaccaaaaacatgcatacgtttctt |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40633268 |
aaacaaggaaaccttttaagcctctcaccaaaaacatgcatacgtttctt |
40633219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 40645072 - 40644833
Alignment:
| Q |
17 |
tatacctgcagtgaactcgaaaaccactacgacagtcatgacagcccaaatagcattttggccaatccctttaaagagtggctccaatatataaagcaat |
116 |
Q |
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||||||||| ||||| ||||| ||||| ||||| ||||||||||||||||||||||| | |||||| |||||||||||||||||||||| | | | ||| |
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| T |
40645072 |
tatacctgcggtgaattcgaacaccacgacgacggtcatgacagcccaaatagcattctcgccaattcctttaaagagtggctccaatagaaataataat |
40644973 |
T |
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| Q |
117 |
gatacaagagtaagagataaaccaactttgaatgcatggatcacccttcttggatcatcacatcccaccttccaagtagtcttccaaaccaaacaaggaa |
216 |
Q |
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| T |
40644972 |
gatacaagagtgagagataaaccaactttgaatgcatggatcacccttcttgggtcatcatatcccaccttccatgtagtcttccaagctaaacacggaa |
40644873 |
T |
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| Q |
217 |
accttttaagcctctcaccaaaaacatgcatacgtttctt |
256 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |
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| T |
40644872 |
accttttaagcctttcaccaaaaacatgcatacgtttctt |
40644833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 246
Target Start/End: Original strand, 4782914 - 4783031
Alignment:
| Q |
129 |
agagataaaccaactttgaatgcatggatcacccttcttggatcatcacatcccaccttccaagtagtcttccaaaccaaacaaggaaaccttttaagcc |
228 |
Q |
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||||| ||||||||||||||||||||||| |||||||| ||||| ||| |||| || ||||| |||||||||||| |||||| ||||| || | |||| |
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| T |
4782914 |
agagacaaaccaactttgaatgcatggataacccttctaggatcttcatatccaacattccatgtagtcttccaagccaaactaggaactctccttagcc |
4783013 |
T |
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| Q |
229 |
tctcaccaaaaacatgca |
246 |
Q |
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|||||||||||||||||| |
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| T |
4783014 |
tctcaccaaaaacatgca |
4783031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 51850336 - 51850179
Alignment:
| Q |
18 |
atacctgcagtgaactcgaaaaccactacgacagtcatgacagcccaaatagcattttggccaatccctttaaagagtggctccaatatataaagcaatg |
117 |
Q |
| |
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||||||||||||||||| | ||||| || ||||||||||||||||| |||||||||| || |||||||| || | |||||||| || ||| | ||| | |
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| T |
51850336 |
atacctgcagtgaactccatgaccacaaccacagtcatgacagcccacatagcattttcccctatccctttgaacaatggctccattagatacaacaaag |
51850237 |
T |
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| Q |
118 |
atacaagagtaagagataaaccaactttgaatgcatggatcacccttcttggatcatc |
175 |
Q |
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||||||| || | || | ||||||||| || | ||||| |||||||||||||||||| |
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| T |
51850236 |
atacaagtgtcaaagcaagaccaactttcaaagaatggaccacccttcttggatcatc |
51850179 |
T |
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