View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17275_high_37 (Length: 250)

Name: NF17275_high_37
Description: NF17275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17275_high_37
NF17275_high_37
[»] chr5 (6 HSPs)
chr5 (1-243)||(12889320-12889562)
chr5 (176-243)||(34470353-34470420)
chr5 (176-238)||(24065533-24065595)
chr5 (180-243)||(5438587-5438650)
chr5 (180-243)||(17958832-17958895)
chr5 (180-243)||(31522042-31522105)
[»] chr3 (5 HSPs)
chr3 (178-243)||(15582616-15582681)
chr3 (178-243)||(15920204-15920269)
chr3 (176-238)||(20444802-20444864)
chr3 (180-243)||(37259217-37259280)
chr3 (180-243)||(5949310-5949373)
[»] chr7 (4 HSPs)
chr7 (178-238)||(16285734-16285794)
chr7 (176-238)||(796878-796940)
chr7 (180-243)||(16391784-16391847)
chr7 (180-243)||(30368296-30368359)
[»] scaffold0094 (1 HSPs)
scaffold0094 (178-243)||(33716-33781)
[»] chr6 (1 HSPs)
chr6 (180-243)||(9134761-9134824)
[»] chr4 (1 HSPs)
chr4 (192-243)||(55785885-55785936)
[»] chr2 (2 HSPs)
chr2 (180-243)||(22951120-22951183)
chr2 (176-238)||(21759074-21759136)
[»] scaffold0029 (1 HSPs)
scaffold0029 (180-243)||(30898-30961)


Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 12889562 - 12889320
Alignment:
Q  1 tgatgaattaatccactctcttgtatttaatgtatttgagtttgacttttttaaatatattttgagttttctaatactcgtttcaataaatcttgcttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  12889562 tgatgaattaatccactctcttgtatttaatgtatttgagtttgactttttgaaatatattttgagttttctgatactcgtttcaataaatcttgcttgt 12889463  T
Q  101 nnnnnnnnnnnnngttatcttaaa-atatatggtatttgtgaactgcgcattgtgtttcttttactatctcggtcattataagtgtcagatttatgccga 199  Q
                 ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  12889462 aaagaaaaaaag-gttatcttaaagatatatggtatttgtgaattgcgcattgtgtttcttttactatctcggtcattataagtgtcagatttatgtcga 12889364  T
Q  200 taagattcatgtgccgccaactgcactcaatgttctttcttctc 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  12889363 taagattcatgtgccgccaactgcactcaatgttctttcttctc 12889320  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 34470353 - 34470420
Alignment:
Q  176 ttataagtgtcagatttatgccgataagattcatgtgccgccaactgcactcaatgttctttcttctc 243  Q
    |||||||||||| || ||||||||||||||||| |||||||| |||||||||||||||||||| ||||    
T  34470353 ttataagtgtcaaatctatgccgataagattcacgtgccgccgactgcactcaatgttctttcctctc 34470420  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 24065595 - 24065533
Alignment:
Q  176 ttataagtgtcagatttatgccgataagattcatgtgccgccaactgcactcaatgttctttc 238  Q
    |||||| ||||| || |||||||||| ||||||||| |||||||||||||||||||| |||||    
T  24065595 ttataaatgtcaaatctatgccgataggattcatgtaccgccaactgcactcaatgtcctttc 24065533  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 5438650 - 5438587
Alignment:
Q  180 aagtgtcagatttatgccgataagattcatgtgccgccaactgcactcaatgttctttcttctc 243  Q
    ||||||||||| || ||||| ||||||||||||||||||||| |||||||| | ||||| ||||    
T  5438650 aagtgtcagatatacgccgacaagattcatgtgccgccaactacactcaatttactttcctctc 5438587  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 17958832 - 17958895
Alignment:
Q  180 aagtgtcagatttatgccgataagattcatgtgccgccaactgcactcaatgttctttcttctc 243  Q
    ||||||||||| || ||||| ||||||||| ||||||||||| |||||||| | ||||| ||||    
T  17958832 aagtgtcagatatacgccgacaagattcatatgccgccaactacactcaatttgctttcctctc 17958895  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 31522042 - 31522105
Alignment:
Q  180 aagtgtcagatttatgccgataagattcatgtgccgccaactgcactcaatgttctttcttctc 243  Q
    ||||||||||| || ||||| ||||||||| ||||||||||| | |||||| | ||||||||||    
T  31522042 aagtgtcagatatacgccgacaagattcatatgccgccaactacgctcaatttactttcttctc 31522105  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 15582681 - 15582616
Alignment:
Q  178 ataagtgtcagatttatgccgataagattcatgtgccgccaactgcactcaatgttctttcttctc 243  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15582681 ataagtgtcagatatatgccgataagattcatgtgccgccaactgcactcagtgttctttcttctc 15582616  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 15920204 - 15920269
Alignment:
Q  178 ataagtgtcagatttatgccgataagattcatgtgccgccaactgcactcaatgttctttcttctc 243  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15920204 ataagtgtcagatatatgccgataagattcatgtgccgccaactgcactcagtgttctttcttctc 15920269  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 20444802 - 20444864
Alignment:
Q  176 ttataagtgtcagatttatgccgataagattcatgtgccgccaactgcactcaatgttctttc 238  Q
    |||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||    
T  20444802 ttataagtgtcaaatctatgccgataagattcatgtgccgccgactgcactcaatgttctttc 20444864  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 37259280 - 37259217
Alignment:
Q  180 aagtgtcagatttatgccgataagattcatgtgccgccaactgcactcaatgttctttcttctc 243  Q
    ||||||||||| || ||||| ||||||||||||||||||||| | |||||| | ||||||||||    
T  37259280 aagtgtcagatatacgccgacaagattcatgtgccgccaactacgctcaatttactttcttctc 37259217  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 5949373 - 5949310
Alignment:
Q  180 aagtgtcagatttatgccgataagattcatgtgccgccaactgcactcaatgttctttcttctc 243  Q
    ||||||||||| || ||||| ||||||||| ||||||||||| |||||||| | ||||| ||||    
T  5949373 aagtgtcagatatacgccgacaagattcatatgccgccaactacactcaatttgctttcctctc 5949310  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 16285794 - 16285734
Alignment:
Q  178 ataagtgtcagatttatgccgataagattcatgtgccgccaactgcactcaatgttctttc 238  Q
    |||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||    
T  16285794 ataagtgtcaaatctatgccgataagattcatgtgccgccgactgcactcaatgttctttc 16285734  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 796940 - 796878
Alignment:
Q  176 ttataagtgtcagatttatgccgataagattcatgtgccgccaactgcactcaatgttctttc 238  Q
    |||||| ||||| || |||||||||| ||||||||| |||||||||||||||||||| |||||    
T  796940 ttataaatgtcaaatctatgccgataggattcatgtaccgccaactgcactcaatgtcctttc 796878  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 16391847 - 16391784
Alignment:
Q  180 aagtgtcagatttatgccgataagattcatgtgccgccaactgcactcaatgttctttcttctc 243  Q
    ||||||||||| || ||||| ||||||||| ||||||||||| |||||||| | ||||| ||||    
T  16391847 aagtgtcagatatacgccgacaagattcatatgccgccaactacactcaatttgctttcctctc 16391784  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 30368359 - 30368296
Alignment:
Q  180 aagtgtcagatttatgccgataagattcatgtgccgccaactgcactcaatgttctttcttctc 243  Q
    ||||||||||| || ||||| ||||||||| ||||||||||| |||||||| | ||||| ||||    
T  30368359 aagtgtcagatatacgccgacaagattcatatgccgccaactacactcaatttactttcctctc 30368296  T

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Target: scaffold0094 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 33781 - 33716
Alignment:
Q  178 ataagtgtcagatttatgccgataagattcatgtgccgccaactgcactcaatgttctttcttctc 243  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||||||| ||||||||| ||||    
T  33781 ataagtgtcagatatatgccgataaaattcatgtgccgcccactgcactcagtgttctttcctctc 33716  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 9134824 - 9134761
Alignment:
Q  180 aagtgtcagatttatgccgataagattcatgtgccgccaactgcactcaatgttctttcttctc 243  Q
    ||||||||||| || ||||| ||||||||||||||||||||| | |||||| | ||||||||||    
T  9134824 aagtgtcagatatacgccgacaagattcatgtgccgccaactacgctcaatttactttcttctc 9134761  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 55785885 - 55785936
Alignment:
Q  192 tatgccgataagattcatgtgccgccaactgcactcaatgttctttcttctc 243  Q
    |||||||||| ||||||||| |||||||||||||||||||| ||||| ||||    
T  55785885 tatgccgataggattcatgtaccgccaactgcactcaatgtactttcctctc 55785936  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 22951120 - 22951183
Alignment:
Q  180 aagtgtcagatttatgccgataagattcatgtgccgccaactgcactcaatgttctttcttctc 243  Q
    ||||||||||| || ||||| ||||||||||||||||||||| |||||||| | ||||| ||||    
T  22951120 aagtgtcagatatacgccgacaagattcatgtgccgccaactacactcaatttactttcctctc 22951183  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 21759136 - 21759074
Alignment:
Q  176 ttataagtgtcagatttatgccgataagattcatgtgccgccaactgcactcaatgttctttc 238  Q
    |||||| ||||| || |||||| |||  |||||||| |||||||||||||||||||| |||||    
T  21759136 ttataaatgtcaaatctatgccaatagcattcatgtaccgccaactgcactcaatgtcctttc 21759074  T

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Target: scaffold0029 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 30898 - 30961
Alignment:
Q  180 aagtgtcagatttatgccgataagattcatgtgccgccaactgcactcaatgttctttcttctc 243  Q
    ||||||||||| || ||||| ||||||||| ||||||||||| |||||||| | ||||| ||||    
T  30898 aagtgtcagatatacgccgacaagattcatatgccgccaactacactcaatttactttcctctc 30961  T

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