View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17275_high_6 (Length: 552)

Name: NF17275_high_6
Description: NF17275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17275_high_6
NF17275_high_6
[»] chr1 (3 HSPs)
chr1 (8-539)||(51874416-51874945)
chr1 (291-379)||(361876-361964)
chr1 (295-372)||(368801-368878)
[»] chr5 (14 HSPs)
chr5 (8-423)||(27173128-27173538)
chr5 (12-425)||(32642902-32643319)
chr5 (98-423)||(42783190-42783509)
chr5 (98-416)||(41227878-41228194)
chr5 (302-419)||(42564971-42565088)
chr5 (8-60)||(42783514-42783566)
chr5 (466-533)||(32642782-32642849)
chr5 (311-357)||(40545130-40545176)
chr5 (299-372)||(43322798-43322871)
chr5 (314-362)||(31789530-31789578)
chr5 (8-60)||(41228199-41228251)
chr5 (314-357)||(40549290-40549333)
chr5 (311-369)||(42629639-42629697)
chr5 (314-362)||(32032879-32032927)
[»] chr6 (4 HSPs)
chr6 (314-425)||(21378482-21378593)
chr6 (302-424)||(21374379-21374501)
chr6 (314-403)||(29145271-29145360)
chr6 (321-425)||(29137235-29137339)
[»] chr3 (2 HSPs)
chr3 (314-357)||(5162465-5162508)
chr3 (314-360)||(2703731-2703777)
[»] scaffold0134 (1 HSPs)
scaffold0134 (317-403)||(16242-16328)
[»] chr2 (1 HSPs)
chr2 (291-377)||(7488743-7488829)
[»] scaffold0613 (1 HSPs)
scaffold0613 (343-403)||(172-232)
[»] scaffold0129 (1 HSPs)
scaffold0129 (329-377)||(33578-33626)
[»] chr7 (3 HSPs)
chr7 (314-370)||(5438314-5438370)
chr7 (314-370)||(5447290-5447346)
chr7 (457-513)||(42446197-42446253)


Alignment Details
Target: chr1 (Bit Score: 472; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 8 - 539
Target Start/End: Original strand, 51874416 - 51874945
Alignment:
Q  8 agattattctagttgatattgaaaccatatcagtttgtatacaatgtcatatcttagtaaccttcatcactcactctaggtaaaaacaataaaaggaatt 107  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51874416 agattattctagttgatattgaaaccatatcagtttgtatgcaatgtcatatcttagtaaccttcatcactcactctaggtaaaaacaataaaaggaatt 51874515  T
Q  108 acttatttattccaccaattggaagaaagttttccttctaaactagtatctcacaataagaactttttctttcaatatcaagcttctcgatcatttgagt 207  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  51874516 acttatttattccgccaattggaagaaagttttccttctaaactactatctcacaataagaactttt-ctttcaatatcaagcttctcgatcatttgagt 51874614  T
Q  208 tcttaagtcaaatcaaactagttcttcgtcttttgttgtgaagaatattttgccattttccattccaaaagtacgttcaacgtaagataatggcccaaca 307  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||    
T  51874615 tcttaagtcaaatcaaactagttcttcgtctttttttgtgaagaatattttgccattttccattctaaaaggacgttcaacgcaagataatggcccaaca 51874714  T
Q  308 aggaaaagtttgatccatgattccttcacacttagttcacccaaaattgaaatattaaaagtagtcatttgtacgtgatatgagatcaaggcaatggatt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51874715 aggaaaagtttgatccatgattccttcacacttagttcacccaaaattgaaatattaaaagtagtcatttgtacgtgatatgagatcaaggcaatggatt 51874814  T
Q  408 gatttaacaccaccaagtataagtatcctttatcatagctatcaattatgtctgaggatatggttgtggtaaagaatacctcattgctcaagtcaaacga 507  Q
     |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  51874815 catttaacaccaccaagtataagcatcctttatcagagctatcaattatgtctgaggatatgggtgtggtaaagaatacctcattgctcaagtcaaacga 51874914  T
Q  508 caccaattctgattcatttttagagttcaaat 539  Q
    |||||||| |||||||||||||||||||||||    
T  51874915 caccaatt-tgattcatttttagagttcaaat 51874945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 291 - 379
Target Start/End: Complemental strand, 361964 - 361876
Alignment:
Q  291 aagataatggcccaacaaggaaaagtttgatccatgattccttcacacttagttcacccaaaattgaaatattaaaagtagtcatttgt 379  Q
    |||||||||| ||||||| ||| || || |||||||||||||||||||  | |||||| | |||||| || | ||||||||||||||||    
T  361964 aagataatggtccaacaatgaagagctttatccatgattccttcacaccgatttcaccaagaattgatatgtgaaaagtagtcatttgt 361876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 295 - 372
Target Start/End: Complemental strand, 368878 - 368801
Alignment:
Q  295 taatggcccaacaaggaaaagtttgatccatgattccttcacacttagttcacccaaaattgaaatattaaaagtagt 372  Q
    |||||| ||||||| ||| |||||||||||||||||||||||||  | |||||| | |||||| || | |||||||||    
T  368878 taatggtccaacaatgaagagtttgatccatgattccttcacaccaatttcaccaagaattgatatgtgaaaagtagt 368801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 9e-56; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 8 - 423
Target Start/End: Original strand, 27173128 - 27173538
Alignment:
Q  8 agattattctagttgatattgaaaccatatcagtttgtatacaatgtcatatcttagtaaccttcatca-ctca-ctctaggtaaaaacaataaaaggaa 105  Q
    ||||||||||  ||||||||||||| |||||||||||||| ||||||||||||  | |||||||||||| | || ||| || | ||||||| ||||||||    
T  27173128 agattattcttattgatattgaaactatatcagtttgtatgcaatgtcatatccaa-taaccttcatcatcacatctcaagatgaaaacaagaaaaggaa 27173226  T
Q  106 ttacttatttattccaccaattggaagaaagttttccttctaaactagtatctcacaataagaactttttctttcaatatcaagcttctcgatcatttga 205  Q
    |||| |||||||||||||||||||||||| |  |||||| ||||||  ||| ||||||||      || || || ||||||||||| ||| ||||||||     
T  27173227 ttacatatttattccaccaattggaagaaggccttccttgtaaactgctatatcacaata------ttctcctttaatatcaagctcctcaatcatttgg 27173320  T
Q  206 gttcttaagtcaaatcaaactagttcttcgtcttttgttgtgaagaatattttgccattttccattccaaaagtacgttcaacgtaagataatggcccaa 305  Q
    |||||||||||||| |||  || ||||  ||||||  || |||||| |||||| || ||| ||||||||||||    ||||||| ||   || || ||||    
T  27173321 gttcttaagtcaaaccaatttatttctctgtctttctttttgaagattattttaccctttgccattccaaaaggttcttcaacgcaatgcaacggtccaa 27173420  T
Q  306 caaggaaaagtttgatccatgattccttcacacttagttcacccaaaattgaaatattaaaagtagtcatttgtacgtgatatgagatcaaggcaatgga 405  Q
    ||| ||| ||||| ||||||||||| || ||||||||||||| ||||||||| || ||| |||||||||||||| | | ||||| ||||||||||||  |    
T  27173421 caatgaagagtttaatccatgattcttttacacttagttcactcaaaattgatatgttacaagtagtcatttgttcttcatatgtgatcaaggcaatata 27173520  T
Q  406 ttgatttaacaccaccaa 423  Q
    |  |||||||||||||||    
T  27173521 tccatttaacaccaccaa 27173538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 12 - 425
Target Start/End: Complemental strand, 32643319 - 32642902
Alignment:
Q  12 tattctagttgatattgaaaccatatcagtttgtatacaatgtcatatcttagtaaccttcatcactca---ctctaggtaaaaacaataaaaggaatta 108  Q
    ||||||| ||||||| |||||||||||||||||||| |||| |||||||  | |||||||||||| |||   |||||| | || |||| ||||||| |||    
T  32643319 tattctaattgatatcgaaaccatatcagtttgtatgcaatatcatatcccaataaccttcatca-tcaaacctctag-tgaacacaagaaaaggattta 32643222  T
Q  109 cttatttattccaccaattggaagaaagttttccttctaaactagtatctcacaataagaactttttctttc---aatatcaagcttctcgatcatttga 205  Q
    |||||||||||||||||||||||||| ||||||||| ||||||| ||||  | ||  |  ||| | || | |   || |||||| | ||| ||||||||     
T  32643221 cttatttattccaccaattggaagaaggttttccttgtaaactactatccgataaccacgactatctcctcctttaacatcaaggtcctcaatcatttgg 32643122  T
Q  206 gttcttaagtcaaatcaaactagttcttcgtcttttgttgtgaagaatattttgccattttccattccaaaagtacgttcaacgtaagataatggcccaa 305  Q
    || ||||| ||||| ||| |||||| ||   ||||| || |||||||||||||||| ||| ||| |||||||| ||| || ||  | || |  || ||||    
T  32643121 gtacttaaatcaaaccaagctagttttttaactttttttttgaagaatattttgccctttcccactccaaaaggacgctcgacacatgacagaggtccaa 32643022  T
Q  306 caaggaaaagtttgatccatgattccttcacacttagttcacccaaaattgaaatattaaaagtagtcatttgtacgtgatatgagatcaaggcaatgga 405  Q
    ||| ||| |||||||||||||||||||||||| ||| ||||| ||||||||| || |||||||||| ||||||| | ||||||| |||||| ||||||||    
T  32643021 caatgaagagtttgatccatgattccttcacagttaattcactcaaaattgatatgttaaaagtagccatttgttcttgatatgtgatcaacgcaatgga 32642922  T
Q  406 ttgatttaacaccaccaagt 425  Q
    |  |||||||||| ||||||    
T  32642921 tccatttaacaccgccaagt 32642902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 98 - 423
Target Start/End: Complemental strand, 42783509 - 42783190
Alignment:
Q  98 aaaaggaattacttatttattccaccaattggaagaaagttttccttctaaactagtatctcacaataagaactttttctttcaatatcaagcttctcga 197  Q
    ||||||||||||||||||||||||||||||||||||| || |||||| ||||||  ||| | ||||||      || || || || |||||||  ||| |    
T  42783509 aaaaggaattacttatttattccaccaattggaagaaggtcttccttgtaaactgctatattacaata------ttctcctttaagatcaagcacctcaa 42783416  T
Q  198 tcatttgagttcttaagtcaaatcaaactagttcttcgtcttttgttgtgaagaatattttgccattttccattccaaaagtacgttcaacgtaagataa 297  Q
    ||||||| |||||||||||||| |||  || ||||  ||||||  || |||||| |||||| || |||  |||||||||||    ||||||| ||   ||    
T  42783415 tcatttgggttcttaagtcaaaccaatttatttctctgtctttctttctgaagattattttaccctttgtcattccaaaaggttcttcaacgcaatgcaa 42783316  T
Q  298 tggcccaacaaggaaaagtttgatccatgattccttcacacttagttcacccaaaattgaaatattaaaagtagtcatttgtacgtgatatgagatcaag 397  Q
     ||||||||||  || ||||| ||||||||||| || ||||||||||||||||||||||| || ||| |||||||| ||||  | | ||| | |||||||    
T  42783315 cggcccaacaataaagagtttaatccatgattcttttacacttagttcacccaaaattgatatgttacaagtagtcgtttggtcttcataagtgatcaag 42783216  T
Q  398 gcaatggattgatttaacaccaccaa 423  Q
    |||||| ||  |||||||||||||||    
T  42783215 gcaatgtatccatttaacaccaccaa 42783190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 98 - 416
Target Start/End: Complemental strand, 41228194 - 41227878
Alignment:
Q  98 aaaaggaattacttatttattccaccaattggaagaaagttttccttctaaactagtatctcacaataagaactttttctttcaatatcaagcttctcga 197  Q
    ||||||||||||||||||||||||||||||||||||| || |||||| ||||||  ||| | ||||||      || || ||||| || ||||  ||| |    
T  41228194 aaaaggaattacttatttattccaccaattggaagaaggtcttccttgtaaactgctatatgacaata------ttctccttcaagatgaagcacctcaa 41228101  T
Q  198 tcatttgagttcttaagtcaaatcaaactagttcttcgtcttttgttgtgaagaatattttgccattttccattccaaaagtacgttcaacgtaagataa 297  Q
    ||||||| |||||||||||||| |||  || ||||  ||||||  || |||||| ||||||  | |||  |||||||||||    ||||||| ||   ||    
T  41228100 tcatttgggttcttaagtcaaaccaatttatttctctgtctttctttctgaagattattttatcctttgtcattccaaaaggttcttcaacgcaatgcaa 41228001  T
Q  298 tggcccaacaaggaaaagtttgatccatgattccttcacacttagttcacccaaaattgaaata----ttaaaagtagtcatttgtacgtgatatgagat 393  Q
     |||||||||| ||| ||||| ||||||||||| || ||||||||||||||| ||||||| |||    ||| |||||||||||||| | | ||||| |||    
T  41228000 cggcccaacaatgaagagtttaatccatgattcttttacacttagttcacccgaaattgatatatatgttacaagtagtcatttgttcttcatatgtgat 41227901  T
Q  394 caaggcaatggattgatttaaca 416  Q
    |||||||||| ||| ||||||||    
T  41227900 caaggcaatgtattcatttaaca 41227878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 302 - 419
Target Start/End: Original strand, 42564971 - 42565088
Alignment:
Q  302 ccaacaaggaaaagtttgatccatgattccttcacacttagttcacccaaaattgaaatattaaaagtagtcatttgtacgtgatatgagatcaaggcaa 401  Q
    ||||||| |||||||||||||||||||||||| |||| |||||||||||||| ||| || ||||||||||| || |   ||||||||| |||||| ||||    
T  42564971 ccaacaatgaaaagtttgatccatgattccttgacacctagttcacccaaaactgatatgttaaaagtagttatcttctcgtgatatgtgatcaaagcaa 42565070  T
Q  402 tggattgatttaacacca 419  Q
    | |||  |||||||||||    
T  42565071 tcgatccatttaacacca 42565088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 42783566 - 42783514
Alignment:
Q  8 agattattctagttgatattgaaaccatatcagtttgtatacaatgtcatatc 60  Q
    ||||||||||  |||||||||||||||||||| ||||||| ||||||||||||    
T  42783566 agattattcttattgatattgaaaccatatcaatttgtatgcaatgtcatatc 42783514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 466 - 533
Target Start/End: Complemental strand, 32642849 - 32642782
Alignment:
Q  466 tatggttgtggtaaagaatacctcattgctcaagtcaaacgacaccaattctgattcatttttagagt 533  Q
    ||||| |||||||||||| || ||||||||||| |||||||||||||| | ||||||  |||||||||    
T  32642849 tatgggtgtggtaaagaacacatcattgctcaaatcaaacgacaccaaatttgattctcttttagagt 32642782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 357
Target Start/End: Complemental strand, 40545176 - 40545130
Alignment:
Q  311 aaaagtttgatccatgattccttcacacttagttcacccaaaattga 357  Q
    ||||||||||||||||||||||||||||  | |||||||||||||||    
T  40545176 aaaagtttgatccatgattccttcacaccaacttcacccaaaattga 40545130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 299 - 372
Target Start/End: Complemental strand, 43322871 - 43322798
Alignment:
Q  299 ggcccaacaaggaaaagtttgatccatgattccttcacacttagttcacccaaaattgaaatattaaaagtagt 372  Q
    ||||||||||  || |||||||||||| ||| ||| ||||  |||||||||||||| ||||||| |||||||||    
T  43322871 ggcccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaaagtagt 43322798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 362
Target Start/End: Complemental strand, 31789578 - 31789530
Alignment:
Q  314 agtttgatccatgattccttcacacttagttcacccaaaattgaaatat 362  Q
    |||||||||||||||||||||||||  | ||||||||||||||| ||||    
T  31789578 agtttgatccatgattccttcacaccaacttcacccaaaattgatatat 31789530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 41228251 - 41228199
Alignment:
Q  8 agattattctagttgatattgaaaccatatcagtttgtatacaatgtcatatc 60  Q
    ||||||||||  |||||||||||||||||||| ||| ||| ||||||||||||    
T  41228251 agattattcttattgatattgaaaccatatcaatttatatgcaatgtcatatc 41228199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 357
Target Start/End: Complemental strand, 40549333 - 40549290
Alignment:
Q  314 agtttgatccatgattccttcacacttagttcacccaaaattga 357  Q
    |||||||||||||||||||||||||  | |||||||||||||||    
T  40549333 agtttgatccatgattccttcacaccgacttcacccaaaattga 40549290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 369
Target Start/End: Original strand, 42629639 - 42629697
Alignment:
Q  311 aaaagtttgatccatgattccttcacacttagttcacccaaaattgaaatattaaaagt 369  Q
    ||||||||||||||||| |||||||| |  | ||||||||||||||| |||| ||||||    
T  42629639 aaaagtttgatccatgactccttcactccgacttcacccaaaattgatatatgaaaagt 42629697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 362
Target Start/End: Complemental strand, 32032927 - 32032879
Alignment:
Q  314 agtttgatccatgattccttcacacttagttcacccaaaattgaaatat 362  Q
    |||||||||||||||||||||||||  | ||||||| ||||||| ||||    
T  32032927 agtttgatccatgattccttcacaccaacttcaccccaaattgatatat 32032879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 314 - 425
Target Start/End: Original strand, 21378482 - 21378593
Alignment:
Q  314 agtttgatccatgattccttcacacttagttcacccaaaattgaaatattaaaagtagtcatttgtacgtgatatgagatcaaggcaatggattgattta 413  Q
    ||||||||||||||||| |||||| ||| |||||| |||||||| || || ||||||||| | | | ||||||||| || || ||||||||||| |||||    
T  21378482 agtttgatccatgattctttcacatttaattcacctaaaattgatatgtttaaagtagtcttcttttcgtgatatgtgaccagggcaatggattcattta 21378581  T
Q  414 acaccaccaagt 425  Q
    |||||| |||||    
T  21378582 acaccatcaagt 21378593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 302 - 424
Target Start/End: Original strand, 21374379 - 21374501
Alignment:
Q  302 ccaacaaggaaaagtttgatccatgattccttcacacttagttcacccaaaattgaaatattaaaagtagtcatttgtacgtgatatgagatcaaggcaa 401  Q
    ||||||| ||| ||||||||||||||||| |||||| |||  ||||| ||| |||| || |||||||||||| | | | ||||||||| || || |||||    
T  21374379 ccaacaatgaagagtttgatccatgattctttcacatttaactcaccaaaatttgatatgttaaaagtagtcttctcttcgtgatatgtgaccagggcaa 21374478  T
Q  402 tggattgatttaacaccaccaag 424  Q
    ||||||  |||||||||| ||||    
T  21374479 tggattcgtttaacaccatcaag 21374501  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 403
Target Start/End: Complemental strand, 29145360 - 29145271
Alignment:
Q  314 agtttgatccatgattccttcacacttagttcacccaaaattgaaatattaaaagtagtcatttgtacgtgatatgagatcaaggcaatg 403  Q
    |||||| ||||||||||||||| || || | ||||||||||||| || | |||| ||||  ||||| | |||||||||||||| ||||||    
T  29145360 agtttggtccatgattccttcatacctaatccacccaaaattgatatgtgaaaattagtagtttgttcatgatatgagatcaatgcaatg 29145271  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 321 - 425
Target Start/End: Complemental strand, 29137339 - 29137235
Alignment:
Q  321 tccatgattccttcacacttagttcacccaaaattgaaatattaaaagtagtcatttgtacgtgatatgagatcaaggcaatggattgatttaacaccac 420  Q
    |||||| |||||||| ||  | |||||||||||| || | || |||||||| ||| | | | |||||||| ||||| ||||||||   ||||||||||||    
T  29137339 tccatgtttccttcataccaacttcacccaaaatagatacatgaaaagtagccatcttttcatgatatgatatcaatgcaatggacaaatttaacaccac 29137240  T
Q  421 caagt 425  Q
    |||||    
T  29137239 caagt 29137235  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 357
Target Start/End: Complemental strand, 5162508 - 5162465
Alignment:
Q  314 agtttgatccatgattccttcacacttagttcacccaaaattga 357  Q
    |||||||||||||||||||||||||  | |||||||||||||||    
T  5162508 agtttgatccatgattccttcacaccaacttcacccaaaattga 5162465  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 2703777 - 2703731
Alignment:
Q  314 agtttgatccatgattccttcacacttagttcacccaaaattgaaat 360  Q
    ||||| |||||||||||||| ||||  ||||||||||||||||||||    
T  2703777 agtttaatccatgattccttgacaccaagttcacccaaaattgaaat 2703731  T

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Target: scaffold0134 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 403
Target Start/End: Original strand, 16242 - 16328
Alignment:
Q  317 ttgatccatgattccttcacacttagttcacccaaaattgaaatattaaaagtagtcatttgtacgtgatatgagatcaaggcaatg 403  Q
    ||||||||||||||||||  ||  | ||||||||||||||| || | |||||||||| || || | ||||| |||||||| ||||||    
T  16242 ttgatccatgattccttcttaccaatttcacccaaaattgatatgtgaaaagtagtccttggttcatgataagagatcaatgcaatg 16328  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 377
Target Start/End: Original strand, 7488743 - 7488829
Alignment:
Q  291 aagataatggcccaacaaggaaaagtttgatccatgattccttcacacttagttcacccaaaattgaaatattaaaagtagtcattt 377  Q
    |||| ||||| ||||||  |||||||||  |||||||||| |||||||  | ||||||||||||||| || | ||||||||| ||||    
T  7488743 aagacaatggtccaacattgaaaagttttttccatgattctttcacaccaatttcacccaaaattgatatgtgaaaagtagttattt 7488829  T

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Target: scaffold0613 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 403
Target Start/End: Complemental strand, 232 - 172
Alignment:
Q  343 ttcacccaaaattgaaatattaaaagtagtcatttgtacgtgatatgagatcaaggcaatg 403  Q
    ||||||||||||||| || | |||||||||| || |||| ||||| |||||||| ||||||    
T  232 ttcacccaaaattgatatgtgaaaagtagtccttggtacatgataagagatcaatgcaatg 172  T

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Target: scaffold0129 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 33578 - 33626
Alignment:
Q  329 tccttcacacttagttcacccaaaattgaaatattaaaagtagtcattt 377  Q
    ||||||||||  |||||||||||||| ||||| | ||||||||||||||    
T  33578 tccttcacaccaagttcacccaaaatagaaatgtgaaaagtagtcattt 33626  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 370
Target Start/End: Original strand, 5438314 - 5438370
Alignment:
Q  314 agtttgatccatgattccttcacacttagttcacccaaaattgaaatattaaaagta 370  Q
    ||||| |||||||||||||||| ||  ||||||||||||| ||| |||| |||||||    
T  5438314 agttttatccatgattccttcataccaagttcacccaaaactgatatatgaaaagta 5438370  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 370
Target Start/End: Original strand, 5447290 - 5447346
Alignment:
Q  314 agtttgatccatgattccttcacacttagttcacccaaaattgaaatattaaaagta 370  Q
    ||||| |||||||||||||||| ||  ||||||||||||| ||| |||| |||||||    
T  5447290 agttttatccatgattccttcataccaagttcacccaaaactgatatatgaaaagta 5447346  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 513
Target Start/End: Complemental strand, 42446253 - 42446197
Alignment:
Q  457 gtctgaggatatggttgtggtaaagaatacctcattgctcaagtcaaacgacaccaa 513  Q
    |||||||| ||| | |||||| |||||||| ||||||||||||||||| || |||||    
T  42446253 gtctgagggtataggtgtggtgaagaatacatcattgctcaagtcaaatgataccaa 42446197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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