View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17275_low_12 (Length: 477)
Name: NF17275_low_12
Description: NF17275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17275_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 444775 - 444309
Alignment:
| Q |
1 |
aatgctggatgaaaagaagctgtgcaagtagcatttgctgttttttcatcaaaccacactttcctctggtaaagccgccacagaatcacaagcactcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
444775 |
aatgctggatgaaaagaagctgtgcaaatagcatttgctgttttttcatcaaaccacactttcctctggtaaagccgccacagaatcacaagcactcttt |
444676 |
T |
|
| Q |
101 |
tggcaactgcttcattctcttcctattgaaacatacattcattgaattaaaaactcgggaaaactaatattataatttccttgaatctaaaggccaaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
444675 |
tggcaactgcttcattctcttcctattgaaacatacattcattgaattaaaaactcgggaaaactaatattataatttccttga-tctaaaggccaaatg |
444577 |
T |
|
| Q |
201 |
atatgggaaaatatagtagtaattcacaaacctgtagcatcttaaacatgacacgctgaagtttttgggtcttgattacagccggtctttttaggcgcct |
300 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
444576 |
atatgggaaaatatagtaataattcacaaacctgtagcatcttaaacatgacactctgaagtttttgggtcttgattacagccggtctttttaggcgcct |
444477 |
T |
|
| Q |
301 |
tatgttgacaacaaggtgctgagatacaaatctggtaagctttttatcgcctaaggtttgtagttccattaacaacggcaatgtttcatcaatagccaca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
444476 |
tatgttgacaacaaggtgctgagatacaaatctggtaagctttttatcgcctaaggtttgtagttccattaacaacggcaatgtttcatcaatagccaca |
444377 |
T |
|
| Q |
401 |
gtctgcacaattcacataaaatcactaattattattctgcaatataatggaatgataatgtgtatatt |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
444376 |
gtctgcacaattcacataaaatcactaattattattctgcaatataatggaatgataatgtgtatatt |
444309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 465373 - 465510
Alignment:
| Q |
13 |
aaagaagctgtgcaagtagcatttgctgttttttcatcaaaccacactttcctctggtaaagccgccacagaatcacaagcactcttttggcaactgctt |
112 |
Q |
| |
|
||||| || |||||| | ||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| |||||||||| | |
|
|
| T |
465373 |
aaagaggcggtgcaaattgcatttgctgttttttcatcaaaccacacttccctcttgtaaagcttccacagaatcacaagcactctcatggcaactgcat |
465472 |
T |
|
| Q |
113 |
cattctcttcctattgaaacatacattcattgaattaa |
150 |
Q |
| |
|
| ||| ||||||||| ||| | |||| |||||||||| |
|
|
| T |
465473 |
ctttcgcttcctattcaaaaacacatgaattgaattaa |
465510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 443539 - 443455
Alignment:
| Q |
22 |
gtgcaagtagcatttgctgttttttcatcaaaccacactttcctctggtaaagccgccacagaatcacaagcactcttttggcaa |
106 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||| |
|
|
| T |
443539 |
gtgcaaattgcatttgctgttttttcatcaaaccacactttcctctggtaaagctcccacagagtcacaagcactctcttggcaa |
443455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 261
Target Start/End: Complemental strand, 442754 - 442711
Alignment:
| Q |
218 |
agtaattcacaaacctgtagcatcttaaacatgacacgctgaag |
261 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||| |||||| |
|
|
| T |
442754 |
agtaattgacaaacctgtagcatcttaaacataacactctgaag |
442711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 466926 - 466991
Alignment:
| Q |
206 |
ggaaaatatagtagtaattcacaaacctgtagcatcttaaacatgacacgctgaagtttttgggtc |
271 |
Q |
| |
|
|||||| | ||||| |||||||||||| ||||||| |||||||||| | |||||||||| ||||| |
|
|
| T |
466926 |
ggaaaacaaagtaggaattcacaaaccagtagcatgttaaacatgagagtctgaagttttcgggtc |
466991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University