View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17275_low_16 (Length: 421)
Name: NF17275_low_16
Description: NF17275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17275_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 3 - 412
Target Start/End: Complemental strand, 38117008 - 38116599
Alignment:
| Q |
3 |
tttatttcttttttattggtccgttgttgctctcgaatttcccacaccccaatcagcgatatcaaagctttcgatcgatttggtgagagaatggaagctg |
102 |
Q |
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| T |
38117008 |
tttatttcttttttattggtccgttgttgctctcgactttcccacaccccaatcagcggtatcaaagctttcgatcgatttggtgagagaatggaagctg |
38116909 |
T |
|
| Q |
103 |
aatcatgtgttcgatttggttataggatgtgagaactaacatttaaaggggagattgttgaatttcaagtgtgagtgttaagcctcacattacctatgaa |
202 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
38116908 |
gatcatgtgttcgatctggttataggacgtgagaactaacatttaagggggagattgttggatttcaagtgcgagtgttaagcctcacattacctatgaa |
38116809 |
T |
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| Q |
203 |
tatggtaaaatattggctatataagatatatgacacgtatatttaacatcttaagattttggatgaagatgtgatttcatcctctcttatcctcttgaaa |
302 |
Q |
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| T |
38116808 |
tatggtaaaatattggctatataagatatgtgacacgtatacataacgtcttaaggttttggatgaagatgtggtttcatcctctcttatcgtcttgaaa |
38116709 |
T |
|
| Q |
303 |
cattgactcgttgttacacccgactttcccgaactcctcaacacttcgagacttttaatgttatgaacaaactaaaagaacaatgtcctcgcaatcatat |
402 |
Q |
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| T |
38116708 |
cattgactcgttgttacacccgacttccccgaactcctcaacacttcgagacttttaatgttatgaacaaactaaaagaacaatgtcctaacaatcatat |
38116609 |
T |
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| Q |
403 |
tgttagaatt |
412 |
Q |
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| T |
38116608 |
tgttagaatt |
38116599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 236
Target Start/End: Original strand, 29447809 - 29447947
Alignment:
| Q |
98 |
agctgaatcatgtgttcgatttggttataggatgtgagaactaacatttaaaggggagattgttgaatttcaagtgtgagtg-ttaagcctcacattacc |
196 |
Q |
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|||||||||| |||| |||| |||||||||| ||| |||| | ||||||| | ||||||||||||||||| ||||| || ||||| ||||||| ||| |
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| T |
29447809 |
agctgaatcacatgttgaattttgttataggatctgataactcatatttaaaagagagattgttgaatttcatatgtgactgattaagtctcacatcacc |
29447908 |
T |
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| Q |
197 |
tatgaatatggtaaaatattggctatataagatatatgac |
236 |
Q |
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||| ||| || |||| | || | ||||||| ||||||||| |
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| T |
29447909 |
tataaat-tgttaaagtgtttgatatataaaatatatgac |
29447947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 281
Target Start/End: Complemental strand, 30724584 - 30724555
Alignment:
| Q |
252 |
cttaagattttggatgaagatgtgatttca |
281 |
Q |
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| T |
30724584 |
cttaagattttggatgaagatgtgatttca |
30724555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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