View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17275_low_19 (Length: 395)
Name: NF17275_low_19
Description: NF17275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17275_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 116 - 382
Target Start/End: Original strand, 28306562 - 28306827
Alignment:
| Q |
116 |
aaggagacacttgataatgtgttcgcaattttgatacattcaaggacaataataacaggccgacaaagcctcacacattcaatgccaaaaatggtatttt |
215 |
Q |
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| T |
28306562 |
aaggagacagttgataatgtgttcgcaattttgatacattcaaggacaataataacaggccgacaatgcctcacacattcaatgccaaaa-tggtatttt |
28306660 |
T |
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| Q |
216 |
ttacccataaatatacatttgattattagaacaacaaaaagtgaggtacttacatcatgtgacaggctattccagccagtgaagtttggtttcaaatctg |
315 |
Q |
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| T |
28306661 |
ttacccataaatatacatttgattattagaacaacaaaaagtgaggtacttacatcatgtgacaggctattccagccagtgaagtttggtttcaaatctg |
28306760 |
T |
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| Q |
316 |
aagaagccatatgactttggttcataaattgcattctatcaaaatcattaaacccttgatgattctg |
382 |
Q |
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| T |
28306761 |
aagaagccatatgactttggttcataaattgcattctatcaaaatcattaaacccttgatgattctg |
28306827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 28306348 - 28306452
Alignment:
| Q |
1 |
aatccatgttcagtcccttcacttcagctaacatctgttgcatcatgtgcttaatcaattattaaaataaacttaagcttaccagggaaatttgaaacac |
100 |
Q |
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| T |
28306348 |
aatccatgttcagtcccttcacttcagctaacatctgttgcatcatgtgcttaatcaattattaaaataaactttagcttaccagggaaatttgaaacac |
28306447 |
T |
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| Q |
101 |
atccc |
105 |
Q |
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| T |
28306448 |
atccc |
28306452 |
T |
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