View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17275_low_20 (Length: 392)
Name: NF17275_low_20
Description: NF17275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17275_low_20 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 37 - 374
Target Start/End: Original strand, 39215985 - 39216322
Alignment:
| Q |
37 |
tggggaaatttgaaaggatataactcaattagacctaacctcaaggaagagctgcgatcaattctatttctcccgttgcatgcatacttttctatgctta |
136 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39215985 |
tggggaaatttgaaaggatataactcaattagacctaacctcaaggaagagctgcgatcaattctatttctcccgttgcatgcatacttttctatgctta |
39216084 |
T |
|
| Q |
137 |
actcatgtagctctcttggatcttctgggacccgtgtcatccactttctcatagctgccacaaagacttgtagcattctagtcatagggctgcctgaggg |
236 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39216085 |
actcatgtagctctcttggattttctgggacccgtgtcatccactttctcatagctgccacaaagacttgtagcattctagtcatagggctgcctgaggg |
39216184 |
T |
|
| Q |
237 |
caatttatgcctatacaatggagttcctaccagaaacaccaatactgaaaccgcaagtccaatggtaggaaggccatatcctacggcccaacccactctg |
336 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39216185 |
caatttatgcctatacaatggagttcctaccagaaataccaatactgaaaccgcaagtccaatggtaggaaggccatatcctacggcccaacccactctg |
39216284 |
T |
|
| Q |
337 |
tcttgtatgtagattacgaaagtgttggagaatagggt |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
39216285 |
tcttgtatgtagattacgaaagtgttggagaatagggt |
39216322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 46 - 374
Target Start/End: Original strand, 39194295 - 39194623
Alignment:
| Q |
46 |
ttgaaaggatataactcaattagacctaacctcaaggaagagctgcgatcaattctatttctcccgttgcatgcatacttttctatgcttaactcatgta |
145 |
Q |
| |
|
|||||| |||| ||| |||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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|
| T |
39194295 |
ttgaaatgataaaacacaattagatctaacctcaacgaagagctgcgatcaattctatttcttacgttgcatgcatatttttctatgcttaactcatgta |
39194394 |
T |
|
| Q |
146 |
gctctcttggatcttctgggacccgtgtcatccactttctcatagctgccacaaagacttgtagcattctagtcatagggctgcctgagggcaatttatg |
245 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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|
| T |
39194395 |
gctcttttggatcttctgggacccgtgtcatccactttctcatagctgccacaaagacttggagcattctagttatagggctgcctgagggcaatttatg |
39194494 |
T |
|
| Q |
246 |
cctatacaatggagttcctaccagaaacaccaatactgaaaccgcaagtccaatggtaggaaggccatatcctacggcccaacccactctgtcttgtatg |
345 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39194495 |
cctatacaatggagttcctaccaaaaacactaatactgaaaccgcaagtccagccgtaggaaggccatatcctacggcccaacccactctgtcttgtatg |
39194594 |
T |
|
| Q |
346 |
tagattacgaaagtgttggagaatagggt |
374 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
39194595 |
tagattacgaaagtgttggagaatagggt |
39194623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 41 - 374
Target Start/End: Original strand, 39223608 - 39223940
Alignment:
| Q |
41 |
gaaatttgaaaggatataactcaattagacctaacctcaaggaagagctgcgatcaattctatttctcccgttgcatgcatacttttctatgcttaactc |
140 |
Q |
| |
|
|||||||||||||||| ||| | ||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||| |
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|
| T |
39223608 |
gaaatttgaaaggataaaacgctattagactta-cctcaaggaagagctgcgatcaattctatttctcccgttggatgcatactcttctattcttaactc |
39223706 |
T |
|
| Q |
141 |
atgtagctctcttggatcttctgggacccgtgtcatccactttctcatagctgccacaaagacttgtagcattctagtcatagggctgcctgagggcaat |
240 |
Q |
| |
|
|||||||||| ||||||||||||| |||| |||||||| |||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||| |
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|
| T |
39223707 |
atgtagctcttttggatcttctggtacccttgtcatcccctttctcatagccgccacaaagacttggagcattctagttatagggctgccggagggcaat |
39223806 |
T |
|
| Q |
241 |
ttatgcctatacaatggagttcctaccagaaacaccaatactgaaaccgcaagtccaatggtaggaaggccatatcctacggcccaacccactctgtctt |
340 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| |||||| |||||||||| |
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|
| T |
39223807 |
ttatgcctgtacaatggagttcctaccagaaacaccaatactgaaactgcaagcccagcggtaggaaggccatatcctacggtccaaccgactctgtctt |
39223906 |
T |
|
| Q |
341 |
gtatgtagattacgaaagtgttggagaatagggt |
374 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
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|
| T |
39223907 |
gtatgtagattacgaaagtgttggagaaaagggt |
39223940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 66 - 374
Target Start/End: Original strand, 39177552 - 39177860
Alignment:
| Q |
66 |
tagacctaacctcaaggaagagctgcgatcaattctatttctcccgttgcatgcatacttttctatgcttaactcatgtagctctcttggatcttctggg |
165 |
Q |
| |
|
||||| ||||||||| |||| ||||||||||||||| |||||||| || || ||||| | ||| || || |||||||| |||||| |||||||||||||| |
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|
| T |
39177552 |
tagacttaacctcaatgaagtgctgcgatcaattctgtttctccccttacaagcataatcttccatactcaactcatgcagctcttttggatcttctggg |
39177651 |
T |
|
| Q |
166 |
acccgtgtcatccactttctcatagctgccacaaagacttgtagcattctagtcatagggctgcctgagggcaatttatgcctatacaatggagttccta |
265 |
Q |
| |
|
|| | || ||||||||| | || |||||| ||||||| ||||| ||||||| |||||| |||||||||||||| |||||||||||||||||||||| |
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|
| T |
39177652 |
acgcatgatttccactttcgaaaagtagccacatagacttggagcatcctagtcaaagggcttcctgagggcaatttgtgcctatacaatggagttccta |
39177751 |
T |
|
| Q |
266 |
ccagaaacaccaatactgaaaccgcaagtccaatggtaggaaggccatatcctacggcccaacccactctgtcttgtatgtagattacgaaagtgttgga |
365 |
Q |
| |
|
||| ||| || |||| ||||| ||||||||||||| |||||||| || || || ||||||||||| ||||||||||||| |||| |||||||||||| |
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|
| T |
39177752 |
ccataaaaacaaatattgaaataccaagtccaatggttggaaggccgtacccaacagcccaacccacattgtcttgtatgtaaattaagaaagtgttgga |
39177851 |
T |
|
| Q |
366 |
gaatagggt |
374 |
Q |
| |
|
||||||||| |
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|
| T |
39177852 |
gaatagggt |
39177860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 73 - 347
Target Start/End: Original strand, 39257255 - 39257529
Alignment:
| Q |
73 |
aacctcaaggaagagctgcgatcaattctatttctcccgttgcatgcatacttttctatgcttaactcatgtagctctcttggatcttctgggacccgtg |
172 |
Q |
| |
|
||||||||| |||| || | |||||| | ||||| |||| |||||||||| |||||| |||| |||||||| | | ||||||| | ||| || | | |
|
|
| T |
39257255 |
aacctcaagaaagatgtgtgttcaattttgtttctagcgttacatgcatactcttctatacttagctcatgtaacagttttggatcatttggaacatgcg |
39257354 |
T |
|
| Q |
173 |
tcatccactttctcatagctgccacaaagacttgtagcattctagtcatagggctgcctgagggcaatttatgcctatacaatggagttcctaccagaaa |
272 |
Q |
| |
|
|| |||| ||||||||||| |||||||||||||| ||||| || || ||||||||||||||||| ||| |||||||||| ||||| |||||||| | ||| |
|
|
| T |
39257355 |
tcttccattttctcatagcagccacaaagacttgaagcatccttgttatagggctgcctgagggaaatctatgcctataaaatggcgttcctacaaaaaa |
39257454 |
T |
|
| Q |
273 |
caccaatactgaaaccgcaagtccaatggtaggaaggccatatcctacggcccaacccactctgtcttgtatgta |
347 |
Q |
| |
|
| | || |||||| ||||| |||||||| ||||| || ||||| | | |||||||||| ||||||||||||| |
|
|
| T |
39257455 |
cgttattattgaaacagcaaggccaatggttggaagtccgtatccgaggccccaacccacattgtcttgtatgta |
39257529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 92 - 317
Target Start/End: Original strand, 39239467 - 39239692
Alignment:
| Q |
92 |
gatcaattctatttctcccgttgcatgcatacttttctatgcttaactcatgtagctctcttggatcttctgggacccgtgtcatccactttctcatagc |
191 |
Q |
| |
|
|||||||||| |||| || || |||| ||||| ||| || || | |||||||||||| || |||||||||||| |||| | |||| ||||| ||||| |
|
|
| T |
39239467 |
gatcaattctggttctaccattacatgtatactcttccatactcagctcatgtagctcctttttatcttctgggacacgtgccttccattttcttatagc |
39239566 |
T |
|
| Q |
192 |
tgccacaaagacttgtagcattctagtcatagggctgcctgagggcaatttatgcctatacaatggagttcctaccagaaacaccaatactgaaaccgca |
291 |
Q |
| |
|
|||||||||||||| ||||| || || ||||||||||||| |||||||| || ||||| |||| ||||||| | ||||||||||| ||||| ||| |
|
|
| T |
39239567 |
agccacaaagacttgaagcatccttgttatagggctgcctggaggcaatttgtgtctataatatggtgttcctaataaaaacaccaatattgaaaatgca |
39239666 |
T |
|
| Q |
292 |
agtccaatggtaggaaggccatatcc |
317 |
Q |
| |
|
|| |||||||| |||||||||||||| |
|
|
| T |
39239667 |
aggccaatggttggaaggccatatcc |
39239692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 176 - 280
Target Start/End: Original strand, 39260970 - 39261074
Alignment:
| Q |
176 |
tccactttctcatagctgccacaaagacttgtagcattctagtcatagggctgcctgagggcaatttatgcctatacaatggagttcctaccagaaacac |
275 |
Q |
| |
|
|||||||||||||||| || ||||||||||| | ||||||||| | ||| || || || || ||| |||||||||| | |||||| |||| || |||||| |
|
|
| T |
39260970 |
tccactttctcatagcagcaacaaagacttgaaccattctagttaaaggacttccagaaggtaatctatgcctataaagtggagtacctaacacaaacac |
39261069 |
T |
|
| Q |
276 |
caata |
280 |
Q |
| |
|
||||| |
|
|
| T |
39261070 |
caata |
39261074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 279
Target Start/End: Original strand, 39245374 - 39245477
Alignment:
| Q |
176 |
tccactttctcatagctgccacaaagacttgtagcattctagtcatagggctgcctgagggcaatttatgcctatacaatggagttcctaccagaaacac |
275 |
Q |
| |
|
|||||||||||||||| || ||||||||||| | ||||||||| | ||| || || || ||||||||||| ||||| | ||| ||||| | || |||||| |
|
|
| T |
39245374 |
tccactttctcatagcagcaacaaagacttgaaccattctagttaaaggacttccagaaggcaatttatgtctataaattggtgttccaaacaaaaacac |
39245473 |
T |
|
| Q |
276 |
caat |
279 |
Q |
| |
|
|||| |
|
|
| T |
39245474 |
caat |
39245477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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