View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17275_low_27 (Length: 312)
Name: NF17275_low_27
Description: NF17275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17275_low_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 4090592 - 4090903
Alignment:
| Q |
1 |
tttattctccttagccataggatacatggaggaaggactcaagtatggttggcatgatggtgttgccatagctttttctgttctactaatacttgcattc |
100 |
Q |
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| T |
4090592 |
tttattctccttagccataggatacatggaggaaggactcaagtatggttggcatgatggtgttgccatagctttttctgttctactaatgcttgcattc |
4090691 |
T |
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| Q |
101 |
tcttcaataacaagcttttggcgtcataggaaaatgatgaacaatccaacaaagcaaaaaggcaaggaggtgaaattcaatgttaaaagaggtgaagtgt |
200 |
Q |
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| T |
4090692 |
tcttcaataacaagcttttggcgtcataggaaaatgatgaacaaaccgacaaagcgaaaaggcaaggaggtgaaattcaatgttaaaagaggtgaagtgt |
4090791 |
T |
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| Q |
201 |
cacagtctgttgatcttgatctctcagtgtctgatattgtggtgggtgacatggtgtttctgagtcctcatgatgaagttccagccgatggtttgcttgt |
300 |
Q |
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| T |
4090792 |
cacagtctgttgatcttgatctctcagcgtctgatattgtggtgggtgacatgatgtttctgagtcctcatgatgaagttccagccgatggtttgcttgt |
4090891 |
T |
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| Q |
301 |
gagtcgtggaat |
312 |
Q |
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| T |
4090892 |
gagtcatggaat |
4090903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 42593978 - 42593904
Alignment:
| Q |
230 |
tctgatattgtggtgggtgacatggtgtttctgagtcctcatgatgaagttccagccgatggtttgcttgtgagt |
304 |
Q |
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| T |
42593978 |
tctgatattgtggtgggtgacatggtctatttgagtccccatgatgaggttcctgcagatggtttgctagtgagt |
42593904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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