View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17275_low_29 (Length: 291)
Name: NF17275_low_29
Description: NF17275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17275_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 16963196 - 16962964
Alignment:
| Q |
21 |
ttggaattgtagggcttttgattctactctttctgttcattttgagaaagtccaaagcagaaagagaagatagatctgttgatatttcaagagaatcaag |
120 |
Q |
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| T |
16963196 |
ttggaattgtagggcttttgattctactctttctgttcattttgagaaagtccaaagcagaaagagaagatagatctgttgatatttcaagagaatcaag |
16963097 |
T |
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| Q |
121 |
actaaatatttatgcaagtaaggccataattacatacacataaacatttcatat--tagtgcacaagttaaatttagatcatatttttcatttcatatta |
218 |
Q |
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| T |
16963096 |
actaaatatttatgcaagtaaggccataattacatacacataaacatttcatattgtagtgcacaagttaaatttagatcatatttttcatttcatatta |
16962997 |
T |
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| Q |
219 |
gtcctttgtttatgctattaatttgtggttctt |
251 |
Q |
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| T |
16962996 |
gtcctttgtttatgctattaatttgtggttctt |
16962964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 151
Target Start/End: Complemental strand, 16215933 - 16215792
Alignment:
| Q |
25 |
aattgtagggcttttgattctactctttctgttcattttgagaaagtccaaagcagaaagagaag---------------atagatctgttgatatttca |
109 |
Q |
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| T |
16215933 |
aattgtagggcttttgattctactctttctgttcattttgagaaagtctaaagcagaaagagaagatagtaaaatagatcatagatctgttgatatttca |
16215834 |
T |
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| Q |
110 |
agagaatcaagactaaatatttatgcaagtaaggccataatt |
151 |
Q |
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| T |
16215833 |
agagaatcaagaccaaatatttatgcaagtaaggccacaatt |
16215792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 48892080 - 48892027
Alignment:
| Q |
23 |
ggaattgtagggcttttgattctactctttctgttcattttgagaaagtccaaa |
76 |
Q |
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| T |
48892080 |
ggaattgcagggcttttgattatattttttctgttcattttgagaaagtccaaa |
48892027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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