View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17275_low_31 (Length: 273)
Name: NF17275_low_31
Description: NF17275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17275_low_31 |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: scaffold0280 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 20 - 256
Target Start/End: Original strand, 8775 - 9007
Alignment:
| Q |
20 |
aaccaaacctgttcagttacctcacacgcaaagaagtaaggatcattactcatttccccattttctcaattttcccgccagaacnnnnnnnnggtcgaaa |
119 |
Q |
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| T |
8775 |
aaccaaacctgttcagttacctcac--gcaaagaagtaaggatcattactcatttccccattttctcaattttcccgccagaacaaaaaaaaagtcgaaa |
8872 |
T |
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| Q |
120 |
aattcccgctaagcattccccaaatgcaaatataaagtcaaatttctcattctcataatcacttacacgcttcaaagaaagaggttcacacttttagtgt |
219 |
Q |
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| T |
8873 |
aatccccgctaagcattccccaaatgcaaatataaagtaaaatttctcattctcataatcacttaa--gcttcaaagaaagaggttcacacttttagtgt |
8970 |
T |
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| Q |
220 |
ttctttctccatcaccaaaaatggaagaagggttaat |
256 |
Q |
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| T |
8971 |
ttctttctccatcaccaaaaatggaagaagggttaat |
9007 |
T |
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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 118 - 256
Target Start/End: Original strand, 21909262 - 21909407
Alignment:
| Q |
118 |
aaaattcccgc-taagcattccccaaatgcaaatataaagtcaaatttctcattctcataatcacttacacgcttcaaagaaagaggttcacactttt-- |
214 |
Q |
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| T |
21909262 |
aaaattcccgcctaagcattccccaaataaaaatataaaagaaaatttctcattctcatcatcacttaca--ctccaaagaaagaggttcacactttttt |
21909359 |
T |
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| Q |
215 |
------agtgtttctttctccatcaccaaaaatggaagaagggttaat |
256 |
Q |
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| T |
21909360 |
aacagcagtgtttctttctccgtcaccaaaaatggaagatggtttaat |
21909407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 26727884 - 26727951
Alignment:
| Q |
117 |
aaaaattcccgctaagcattccccaaatgcaaatataaagtcaaatttctcattctcataatcactta |
184 |
Q |
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| T |
26727884 |
aaaaattcccgctaagcattccccaaatacaaatataaaataaaatttctcattctcatcatcactta |
26727951 |
T |
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