View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17275_low_33 (Length: 266)
Name: NF17275_low_33
Description: NF17275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17275_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 39215733 - 39215968
Alignment:
| Q |
1 |
tctagcgtggtgccttgtttaatgaagagtgtagttgattgaactatcaatgtgcttgggataagtgttgtaatcaaaatcggaatcatttttgtcattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39215733 |
tctagcgtggtgccttgtttaatgaagagtgtagttgattgaactatcaatgtgcttgggataagtgttgtaatcaaaatcggaatcatttttgtcattt |
39215832 |
T |
|
| Q |
101 |
gtttggtttcctcaacttgtgtcactgtacaaagcatccatggtgaagtttggcctgtctttgtagccgctttgtcaaggaaactacaagcatagaagaa |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39215833 |
gtttggtttcctcaacttgtgtcactgtacaaagcatccattgtgaagtttggcctgtctttgtagccgctttgtcaaggaaactacaagcatagaagaa |
39215932 |
T |
|
| Q |
201 |
gtgatgtatgcaaattaaatgatcaacacccaatct |
236 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
39215933 |
gtgatgcatgcaaattaaatgatcaacacccaatct |
39215968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 39223350 - 39223595
Alignment:
| Q |
1 |
tctagcgtggtgccttgtttaatgaagagtgtagttgattgaactatcaatgtgcttgggataagtgttgtaatcaaaatcggaatcatttttgtcattt |
100 |
Q |
| |
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|||||||||||||||||||||| ||||||||| || |||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
39223350 |
tctagcgtggtgccttgtttaacgaagagtgttgtcgattgaactagcaatgtgcttgggataagtgttgtaatcaaaataggtatcatttttgtcattt |
39223449 |
T |
|
| Q |
101 |
gtttggtttcctcaacttgtgtcactgtacaaagcatccatggtgaagtttggcctgtctttgtagccgctttgtcaaggaaactacaagcatagaagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
39223450 |
gtttggtttcctcaacttgtgtcactgtacaaagcatccacggtgaagtttggcctgtcttcgtagccgctttgtctaggaaactacaagcatagaagaa |
39223549 |
T |
|
| Q |
201 |
gtgatgtatgcaaattaaatgatcaacacccaatctttgtgacatg |
246 |
Q |
| |
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|||||| ||||||||||||| | |||||||||||||||||||||| |
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| T |
39223550 |
gtgatgcatgcaaattaaatttttaacacccaatctttgtgacatg |
39223595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 64 - 206
Target Start/End: Original strand, 39194123 - 39194265
Alignment:
| Q |
64 |
agtgttgtaatcaaaatcggaatcatttttgtcatttgtttggtttcctcaacttgtgtcactgtacaaagcatccatggtgaagtttggcctgtctttg |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39194123 |
agtgttgtaatcaaaatcggaatcatttttgtcatttgtttggtttcctcaacttgtgtcactgtacaaagcatccatggtgaagtttggcctgtctttg |
39194222 |
T |
|
| Q |
164 |
tagccgctttgtcaaggaaactacaagcatagaagaagtgatg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
39194223 |
tagccgctttgtcaaggaaactacaagcatataagaagtgatg |
39194265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 39177276 - 39177465
Alignment:
| Q |
1 |
tctagcgtggtgccttgtttaatgaagagtgtagttgattgaactatcaatgtgcttgggataagtgttgtaatcaaaatcggaatcatttttgtcattt |
100 |
Q |
| |
|
||||| ||| |||||||||||||||||||||| || ||||||| |||||||||||||| |||| ||||||||||| ||| ||||||||||||||||||| |
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| T |
39177276 |
tctagtgtgatgccttgtttaatgaagagtgtggtcgattgaatcatcaatgtgcttggcataattgttgtaatcagaataggaatcatttttgtcattt |
39177375 |
T |
|
| Q |
101 |
gtttggtttcctcaacttgtgtcactgtacaaagcatccatggtgaagtttggcctgtctttgtagccgctttgtcaaggaaactacaag |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| |||| |||||||||||||||||||||| |
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| T |
39177376 |
gtttggtttcctcaacttgtgtcactgtacaaagcatccatggcgacgtttggccggtctttatagctgctttgtcaaggaaactacaag |
39177465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 39193997 - 39194073
Alignment:
| Q |
1 |
tctagcgtggtgccttgtttaatgaagagtgtagttgattgaactatcaatgtgcttgggataagtgttgtaatcaa |
77 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39193997 |
tctagcgtggtgccttgtttaatgaagagtgtagttgattgaactatcaatgtgcttgggataagtgttgtaatcaa |
39194073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 39256992 - 39257166
Alignment:
| Q |
7 |
gtggtgccttgtttaatgaagagtgtagttgattgaactatcaatgtgcttgggataagtgttgtaatcaaaatcggaatcatttttgtcatttgtttgg |
106 |
Q |
| |
|
||||| |||||||||||||||||||| |||||| | || || |||||||| |||| |||| |||||||||| || |||| ||| ||||||| |||| |
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| T |
39256992 |
gtggtaccttgtttaatgaagagtgtgaatgattgcattaccatggtgcttggaataattgttataatcaaaataggtatcagtttaatcatttgcttgg |
39257091 |
T |
|
| Q |
107 |
tttcctcaacttgtgtcactgtacaaagcatccatggtgaagtttggcctgtctttgtagccgctttgtcaagga |
181 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||| || || ||| ||||||||||||| |
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| T |
39257092 |
tttcctcaacttgtgtcactgtacatagcatccatgatgaagtttggccagttgttacagctgctttgtcaagga |
39257166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 39260238 - 39260419
Alignment:
| Q |
1 |
tctagcgtggtgccttgtttaatgaagagtgtagttgattgaactatcaatgtgcttgggataagtgttgtaatcaaaatcggaatcatttttgtcattt |
100 |
Q |
| |
|
||||| || ||||||||| | |||||||| || |||| |||| ||| | |||||||| ||| |||||||||||| | || | |||||||||||||| |
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|
| T |
39260238 |
tctagagttgtgccttgtctgatgaagagcgtggttgtttgagatataatggtgcttggaatacatgttgtaatcaatacaggtaacatttttgtcattt |
39260337 |
T |
|
| Q |
101 |
gtttggtttcctcaacttgtgtcactgtacaaagcatccatggtgaagtttggcctgtctttgtagccgctttgtcaaggaa |
182 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||| |
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| T |
39260338 |
gtttggtttcttcaatttgtgtcacagtacaaagcatccatggtgaagtttggccagtcttcacagcagctttgtcaaggaa |
39260419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 39244815 - 39245002
Alignment:
| Q |
1 |
tctagcgtggtgccttgtttaatgaagagtgtagttgattgaactatcaatgtgcttgggataagtgttgtaatcaaaatcggaatcatttttgtcattt |
100 |
Q |
| |
|
||||| |||||||||||||| | ||||||||| ||| |||| | | | | ||||||| ||| ||||| |||||| || || |||||||||||||||| |
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| T |
39244815 |
tctagagtggtgccttgtttgacgaagagtgtgtttgtttgagcgaaaattatgcttggaatacatgttgcaatcaatatagggatcatttttgtcattt |
39244914 |
T |
|
| Q |
101 |
gtttggtttcctcaacttgtgtcactgtacaaagcatccatggtgaagtttggcctgtctttgtagccgctttgtcaaggaaactaca |
188 |
Q |
| |
|
|||| |||||||||| ||||||||| || |||||||||||||||||||||||| | ||||| || |||||||||||||||||||| |
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|
| T |
39244915 |
gttttgtttcctcaatttgtgtcacagtgcaaagcatccatggtgaagtttggtcggtcttcactgcagctttgtcaaggaaactaca |
39245002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 192
Target Start/End: Original strand, 39239088 - 39239208
Alignment:
| Q |
72 |
aatcaaaatcggaatcatttttgtcatttgtttggtttcctcaacttgtgtcactgtacaaagcatccatggtgaagtttggcctgtctttgtagccgct |
171 |
Q |
| |
|
|||| |||| |||| || |||||||||||| || |||||||||| |||||||||||||||||||||||||| ||| |||| || |||||| |||||||| |
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| T |
39239088 |
aatcgaaataggaaccagttttgtcatttgcttagtttcctcaatttgtgtcactgtacaaagcatccatgttgatttttgtccggtctttatagccgct |
39239187 |
T |
|
| Q |
172 |
ttgtcaaggaaactacaagca |
192 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
39239188 |
ttgtcaaggaaactgcaagca |
39239208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 39250750 - 39250938
Alignment:
| Q |
1 |
tctagcgtggtgccttgtttaatgaagagtgtagttgattgaactatcaatgtgcttgggataagtgttgtaatcaaaatcggaatcatttttgtcattt |
100 |
Q |
| |
|
||||| || ||||||||||| | ||||||||| ||| |||| | | | ||||||||| ||| || || |||||| || || |||||||||||||||| |
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|
| T |
39250750 |
tctagagtagtgccttgtttgacgaagagtgtgtttgtttgagcaaaaattgtgcttggaatacatgatgcaatcaatatagggatcatttttgtcattt |
39250849 |
T |
|
| Q |
101 |
gtttggtttcctcaacttgtgtcactgtacaaagcatccatggtgaagtttggcctgtctttgtagccgctttgtcaaggaaactacaa |
189 |
Q |
| |
|
|||| |||||||||| ||||||||| ||||||||||||||||||||||||||| | ||||| || |||||||||||||| |||||| |
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|
| T |
39250850 |
gttttgtttcctcaatttgtgtcacagtacaaagcatccatggtgaagtttggtcggtcttcactgcagctttgtcaaggaatctacaa |
39250938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 39194107 - 39194068
Alignment:
| Q |
1 |
tctagcgtggtgccttgtttaatgaagagtgtagttgatt |
40 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39194107 |
tctagcgtggtgccttgtttaatgaagagtgtagttgatt |
39194068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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