View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17275_low_36 (Length: 250)
Name: NF17275_low_36
Description: NF17275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17275_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 5e-68; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 102 - 240
Target Start/End: Original strand, 16498920 - 16499058
Alignment:
| Q |
102 |
ctaacaattgatttctcataaaactcatacattgaaatggaagaaattcattatcacttgatgattagttcccaacatttaaagcatgtcaggagtcacg |
201 |
Q |
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| T |
16498920 |
ctaacaattgatttctcataaaactcatacattgaaatggaagaaattcatcatcacttgatgattagtttccaacatttaaagcatgtcaggagtcacg |
16499019 |
T |
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| Q |
202 |
cgaagcaaacgaagacttctctccattttaagttctgtg |
240 |
Q |
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| T |
16499020 |
cgaagcaaacgaagacttctctccattttaagttctgtg |
16499058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 16471149 - 16471207
Alignment:
| Q |
182 |
aaagcatgtcaggagtcacgcgaagcaaacgaagacttctctccattttaagttctgtg |
240 |
Q |
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| T |
16471149 |
aaagcatatcaggtgacaagcgaagcaaacgaagacttctctccattttaagttctgtg |
16471207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 16464146 - 16464185
Alignment:
| Q |
201 |
gcgaagcaaacgaagacttctctccattttaagttctgtg |
240 |
Q |
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| T |
16464146 |
gcgaagcaaacgaagacttctctccattttaagttctgtg |
16464185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 16493641 - 16493679
Alignment:
| Q |
202 |
cgaagcaaacgaagacttctctccattttaagttctgtg |
240 |
Q |
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| T |
16493641 |
cgaagcagacgaagacttctctccattttaagttctgtg |
16493679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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