View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17275_low_40 (Length: 228)
Name: NF17275_low_40
Description: NF17275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17275_low_40 |
 | |
|
| [»] scaffold0140 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 30022756 - 30022976
Alignment:
| Q |
7 |
tggtggagttgagaaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggt |
106 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| | || || ||||||||||| ||||||||||||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
30022756 |
tggtggagttgaggaaattcagaaacttcatgatgacaagaaacttgagaaattacttgattgttgtgaaaggattaatgacattgaaggaggtgatggt |
30022855 |
T |
|
| Q |
107 |
ggatgtgaggcttgtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataatt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30022856 |
ggatgtgaggcttgtggtgatataaagtttgttccttgtgaaacatgttatggaagttgtaaaatctactatgaaggtgattatgaagaagatgataatt |
30022955 |
T |
|
| Q |
207 |
gtgaggttggtgggtgagtgt |
227 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
30022956 |
gtgaggtttgtgggtgagtgt |
30022976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 21386973 - 21386755
Alignment:
| Q |
7 |
tggtggagttgagaaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggt |
106 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| | || ||||||||||||||| ||||||||||||||| |||| ||| ||| ||||||||||||||| |
|
|
| T |
21386973 |
tggtggagttgaggaaatttagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaatgattaatggcattgaaggaggtgatggt |
21386874 |
T |
|
| Q |
107 |
ggatgtgaggcttgtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataatt |
206 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||| |||||||||||| ||| |||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
21386873 |
ggatgtgaggcttgtggtgatatcaagtttgtttcttgtgaaacatgttatggaagttgtaaaatctactatgaaggtaattacgaagaagatgataatt |
21386774 |
T |
|
| Q |
207 |
gtgaggttggtgggtgagt |
225 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
21386773 |
gtgaggttggtgggtgagt |
21386755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 27 - 227
Target Start/End: Complemental strand, 33697065 - 33696865
Alignment:
| Q |
27 |
agaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggtggatgtgaggcttgtggtga |
126 |
Q |
| |
|
|||||||||||||| | || ||||||||||||||| ||||||||||||||| || ||||||||| |||| |||||| |||||| |||||||||||||||| |
|
|
| T |
33697065 |
agaaacttcatgatgacaagaagcttgagaaattgtttgattgttgtgaaaggagtgatgacattgaagtaggtgaaggtggacgtgaggcttgtggtga |
33696966 |
T |
|
| Q |
127 |
tataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataattgtgaggttggtgggtgagtg |
226 |
Q |
| |
|
||||||||||||||||| | |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33696965 |
tataaagtttgttccttgttaaacatgttatggaagttgtaaaatctactatgaaggtgattatgaagaagatgataattgtgaggttggtgggtgagtg |
33696866 |
T |
|
| Q |
227 |
t |
227 |
Q |
| |
|
| |
|
|
| T |
33696865 |
t |
33696865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 29644511 - 29644698
Alignment:
| Q |
13 |
agttgagaaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggtggatgt |
112 |
Q |
| |
|
||||||| |||||||||||||||||||| | || ||||||||||||||| ||||||||||||||| |||||||||||| ||||||| ||||||||||| | |
|
|
| T |
29644511 |
agttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacattgaaggagatgatggtggattt |
29644610 |
T |
|
| Q |
113 |
gaggcttgtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatg |
200 |
Q |
| |
|
||||||||| |||| ||||| |||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29644611 |
gaggcttgtcgtgacataaattttgttccttgtgaaacatgttatggaagttgtaaaatctactatgaaggtgattatgaagaagatg |
29644698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 2373011 - 2373090
Alignment:
| Q |
103 |
tggtggatgtgaggcttgtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaag |
182 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||| |||||| |||| ||| |||||||||||||||||||| |
|
|
| T |
2373011 |
tggtggatgtgagaattgtggtgatataaggtttgttccttgtgaaacttgttttggaagttgtaaaatctactatgaag |
2373090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 2372924 - 2373001
Alignment:
| Q |
7 |
tggtggagttgagaaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattga |
84 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||| || ||| |||||||||||| | || |||||||| || ||||| |
|
|
| T |
2372924 |
tggtggagttgaggaaattgagaaacttcatgaagatggaaaacttgagaaattgttggaatgttgtgagaaaattga |
2373001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 32155048 - 32154828
Alignment:
| Q |
7 |
tggtggagttgagaaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggt |
106 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| | || ||||||||||||||| ||||||||||||||| |||||||||||| ||| || |||||||| |
|
|
| T |
32155048 |
tggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacattgaaagatgtgatggt |
32154949 |
T |
|
| Q |
107 |
ggatgtgaggcttgtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataatt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32154948 |
ggatgtgaggcttgtggtgatataaagttcgttccttatgaaacatgttatggaagttgtaaaatctactatgaagatgattatgaagaagatgataatt |
32154849 |
T |
|
| Q |
207 |
gtgaggttggtgggtgagtgt |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32154848 |
gtgaggttggtgggtgagtgt |
32154828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 3377467 - 3377678
Alignment:
| Q |
7 |
tggtggagttgagaaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggt |
106 |
Q |
| |
|
||||||||||||| ||||||||||| | |||||| ||||||||||||||||||| ||||||||||||||| |||| ||||| ||||||||||||||| |
|
|
| T |
3377467 |
tggtggagttgaggaaattcagaaattacatgatgataaaaagcttgagaaattatttgattgttgtgaaagagttgacgacattgaaggaggtgatggt |
3377566 |
T |
|
| Q |
107 |
ggatgtgaggcttgtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataatt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3377567 |
ggatgtgaggcttgtggtgatataaagtttgttccttgtgaaaaatgttatggaagttgtaaaatctactatgaaggtgattatgaagaagatgatgatt |
3377666 |
T |
|
| Q |
207 |
gtgaggttggtg |
218 |
Q |
| |
|
||||||||||| |
|
|
| T |
3377667 |
atgaggttggtg |
3377678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 14608420 - 14608626
Alignment:
| Q |
21 |
aaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggtggatgtgaggcttg |
120 |
Q |
| |
|
||||||||| |||| |||| | || ||| ||||||||||| | |||| |||||||| |||| | |||| ||||||||||||||||||||||||||||| |
|
|
| T |
14608420 |
aaattcagagactttgtgatgacaagaagtttgagaaattgctcgattattgtgaaaggattaacaacattgaaggaggtgatggtggatgtgaggcttg |
14608519 |
T |
|
| Q |
121 |
tggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataattgtgaggttggtggg |
220 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||| ||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
14608520 |
tggtgatataaaatttgttccttgtgaaacatgttatggaagttgtaaaatctactatggaggtgattataaagaagatgataattgtgaggttagtggg |
14608619 |
T |
|
| Q |
221 |
tgagtgt |
227 |
Q |
| |
|
||||||| |
|
|
| T |
14608620 |
tgagtgt |
14608626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 10317435 - 10317216
Alignment:
| Q |
7 |
tggtggagttgagaaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||| |||||||| ||| ||||||||||||||| |
|
|
| T |
10317435 |
tggtggagttgagaaaattcagaaacttcatgatgacaaaaagcttgagaaattgcttgattgttgtgaaaggattgatggcattgaaggaggtgatggt |
10317336 |
T |
|
| Q |
107 |
ggatgtgaggcttgtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataatt |
206 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10317335 |
ggat-tgaggcttatggtgatataaagtttgttccttgtgaaacatgttatggaagttgtaaaatctactatgaaggtaattatgaagaagatgataatt |
10317237 |
T |
|
| Q |
207 |
gtgaggttggtgggtgagtgt |
227 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
10317236 |
gtgaggtttgtgggtgagtgt |
10317216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 14252228 - 14252448
Alignment:
| Q |
7 |
tggtggagttgagaaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggt |
106 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||| | || ||||||||||||||| ||||| ||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
14252228 |
tggtggagttgaggaaattcaaaaacttcatgatgacaagaagcttgagaaattgcttgatcgttgtgaaaggattgatgacattgaaggaggtgatggt |
14252327 |
T |
|
| Q |
107 |
ggatgtgaggcttgtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataatt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| | | | || |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14252328 |
ggatgtgaggcttgtggtgatataaagtttgttccttgtgaaacatatcataaaagttgtaaaatctactataaaggtgattatgaagaagatgataatt |
14252427 |
T |
|
| Q |
207 |
gtgaggttggtgggtgagtgt |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
14252428 |
gtgaggttggtgggtgagtgt |
14252448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 10316377 - 10316170
Alignment:
| Q |
20 |
aaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggtggatgtgaggctt |
119 |
Q |
| |
|
||||||||||||||||||||| | || ||||||||||||||| |||||| ||||||| |||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
10316377 |
aaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattattgtgaatggattgatggcattgaaggaggtgatggtggatgtgaggctt |
10316278 |
T |
|
| Q |
120 |
gtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataattgtgaggttggtgg |
219 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10316277 |
gtggtgatataaagtttgttccttgtgaaacatgttatggaagttgtaaaatctactatgaaggtgattatgaagaagatgataattgtgaggtttgtgg |
10316178 |
T |
|
| Q |
220 |
gtgagtgt |
227 |
Q |
| |
|
|||||||| |
|
|
| T |
10316177 |
gtgagtgt |
10316170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 10315649 - 10315444
Alignment:
| Q |
20 |
aaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggtggatgtgaggctt |
119 |
Q |
| |
|
||||||||||||||||||||| | || ||||||||||||||| ||||||||||||||| |||||||| ||| ||| |||||||||||||||||||||||| |
|
|
| T |
10315649 |
aaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaatgattgatggcattgaaagaggtgatggtggatgtgaggctt |
10315550 |
T |
|
| Q |
120 |
gtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataattgtgaggttggtgg |
219 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10315549 |
gtggtgatattaagtttgttccttgtgaaacatgttatggaagttgtaaaatctacgatgaaggtgattatgaagaagatgataattgtgaggtttgtgg |
10315450 |
T |
|
| Q |
220 |
gtgagt |
225 |
Q |
| |
|
|||||| |
|
|
| T |
10315449 |
gtgagt |
10315444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 10317059 - 10316852
Alignment:
| Q |
20 |
aaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggtggatgtgaggctt |
119 |
Q |
| |
|
||||||||||||||||||||| | || ||||||||||||||| |||||| ||||||| |||||||| ||| |||||||||||| ||||||||||||||| |
|
|
| T |
10317059 |
aaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattattgtgaatggattgatggcattgaaggaggtgattgtggatgtgaggctt |
10316960 |
T |
|
| Q |
120 |
gtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataattgtgaggttggtgg |
219 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10316959 |
gtggtgatataaagtttgttccttgcgaaacatgttatggaagttgtaaaatctactatgaaggtgattatgaagaagatgataattgtgaggtttgtgg |
10316860 |
T |
|
| Q |
220 |
gtgagtgt |
227 |
Q |
| |
|
|||||||| |
|
|
| T |
10316859 |
gtgagtgt |
10316852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 10316013 - 10315806
Alignment:
| Q |
20 |
aaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggtggatgtgaggctt |
119 |
Q |
| |
|
||||||||||||||||||||| | || ||||||||||||||| |||||| ||||||| |||||||| ||| |||||| |||||| |||||||||| ||| |
|
|
| T |
10316013 |
aaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattattgtgaatggattgatggcattgaaggatgtgatgttggatgtgagactt |
10315914 |
T |
|
| Q |
120 |
gtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataattgtgaggttggtgg |
219 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10315913 |
atggtgatataaagtttgttccttgtgaaacatgttatggaagttgtaaaatctactatgaaggtgattatgaagaagatgataattgtgaggtttgtgg |
10315814 |
T |
|
| Q |
220 |
gtgagtgt |
227 |
Q |
| |
|
|||||||| |
|
|
| T |
10315813 |
gtgagtgt |
10315806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 7 - 208
Target Start/End: Original strand, 5607160 - 5607361
Alignment:
| Q |
7 |
tggtggagttgagaaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggt |
106 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| || ||||||||||||||| ||||||||||||||| |||||||||||| |||| ||||||||| |
|
|
| T |
5607160 |
tggtggagttgaggaaattcagaaacttcatgataacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacattgaagacggtgatggt |
5607259 |
T |
|
| Q |
107 |
ggatgtgaggcttgtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataatt |
206 |
Q |
| |
|
||||||||| |||| |||||||||||| ||||||||| ||||||||||| ||| |||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
5607260 |
ggatgtgagacttgcggtgatataaagcttgttccttgtgaaacatgttttggaagttgtaaaatctactatgaaggtaattatgaagaaaatgataatt |
5607359 |
T |
|
| Q |
207 |
gt |
208 |
Q |
| |
|
|| |
|
|
| T |
5607360 |
gt |
5607361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 9758652 - 9758860
Alignment:
| Q |
7 |
tggtggagttgagaaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | || ||||||||||||||| |||||| |||||||| |||||||||||| |||||| |
|
|
| T |
9758652 |
tggtggagttgagaaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgatttttgtgaaaggattgatgacattgaagga--------- |
9758742 |
T |
|
| Q |
107 |
ggatgtgaggcttgtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataatt |
206 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9758743 |
---tgtcaggcttgtgctgatataaagtttgttccttatgaaacatgttatggaagttgtaaaatctactatgaaggtgattatgaagaagatgataatt |
9758839 |
T |
|
| Q |
207 |
gtgaggttggtgggtgagtgt |
227 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
9758840 |
gcgaggttggtgggtgagtgt |
9758860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 10316702 - 10316531
Alignment:
| Q |
20 |
aaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggtggatgtgaggctt |
119 |
Q |
| |
|
||||||||||||||||||||| | || ||||||||||||||| |||||| |||||| |||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
10316702 |
aaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattactgtgaatggattgatggcattgaaggaggtgatggtggatgtgaggctt |
10316603 |
T |
|
| Q |
120 |
gtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatg |
191 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
10316602 |
gtggtgatataaagtttgttccttgtgaaacatgttatggaagttgtaaaatctactatgaaggtgattatg |
10316531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 44209453 - 44209667
Alignment:
| Q |
7 |
tggtggagttgagaaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggt |
106 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| || ||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
44209453 |
tggtggagttgaggaaattcagaaacttcatgatggcaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacattgaaggaggtgatggt |
44209552 |
T |
|
| Q |
107 |
ggatgtgaggcttgtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataatt |
206 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44209553 |
ggatgcgaggcttgtggtgatataaagtttgttccttatgaaacatgttatggaagttgtaaaatctactatgacggtgattatgaagaagatgataatt |
44209652 |
T |
|
| Q |
207 |
gtgaggttggtgggt |
221 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
44209653 |
gcgaggttggtgggt |
44209667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 22388703 - 22388923
Alignment:
| Q |
7 |
tggtggagttgagaaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggt |
106 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| | || ||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||| || |
|
|
| T |
22388703 |
tggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacattgaaggaggtgatagt |
22388802 |
T |
|
| Q |
107 |
ggatgtgaggcttgtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataatt |
206 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
22388803 |
ggatgtggggtttgtggtgatataaagtttgttccttctgaaacatgttatgaaagttgtaaaatctactatgaatgtggttatgaagaagatgataatt |
22388902 |
T |
|
| Q |
207 |
gtgaggttggtgggtgagtgt |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
22388903 |
gtgaggttggtgggtgagtgt |
22388923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 32814587 - 32814807
Alignment:
| Q |
7 |
tggtggagttgagaaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggt |
106 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| | || || |||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
32814587 |
tggtggagttgaggaaattcagaaatttcatgatgacaagaaacttgagaaattgtttgattgttgtgaaaggattgatgacattgaaggaggtgatggt |
32814686 |
T |
|
| Q |
107 |
ggatgtgaggcttgtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||| || ||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
32814687 |
tgatgtgaggcttgtggtgatataaagtttgttccttgttaaacatgttatgtaagttgtaaaatctactatgaaggtgattacgaagaagatggtaatt |
32814786 |
T |
|
| Q |
207 |
gtgaggttggtgggtgagtgt |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
32814787 |
gtgaggttggtgggtgagtgt |
32814807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 43214837 - 43215057
Alignment:
| Q |
7 |
tggtggagttgagaaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggt |
106 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| | || ||||||||||||||| ||||||||||||||| |||||| ||||| ||||||||||| ||| |
|
|
| T |
43214837 |
tggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgtttgattgttgtgaaaggattgaggacattgaaggaggtgacggt |
43214936 |
T |
|
| Q |
107 |
ggatgtgaggcttgtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataatt |
206 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43214937 |
ggatgtaaagcttgtggtgatataaagtttgttccttgtgaaacatgttgtggaagttgtaaaatctactatgaaggtgattatgaagaagatggtaatt |
43215036 |
T |
|
| Q |
207 |
gtgaggttggtgggtgagtgt |
227 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
43215037 |
gtgaggttggtggatgagtgt |
43215057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 52 - 221
Target Start/End: Original strand, 44209675 - 44209844
Alignment:
| Q |
52 |
tgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggtggatgtgaggcttgtggtgatataaagtttgttccttttgaaaca |
151 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44209675 |
tgagaaattgcttgattgttgtgaaaggattgatgacattgaaggaggtgatggtggatgcgaggcttgtggtgatataaagtttgttccttatgaaaca |
44209774 |
T |
|
| Q |
152 |
tgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataattgtgaggttggtgggt |
221 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44209775 |
tgttatggaagttgtaaaatctactatgaaggtgattatgaagaagatgataattgtgaggttggtgggt |
44209844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 27341532 - 27341752
Alignment:
| Q |
7 |
tggtggagttgagaaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggt |
106 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| | || ||||||||||||||| ||||||||||||||| |||| ||||||| ||||||||||||| | |
|
|
| T |
27341532 |
tggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggatttatgacattgaaggaggtgatgat |
27341631 |
T |
|
| Q |
107 |
ggatgtgaggcttgtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataatt |
206 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| | |||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27341632 |
ggatgtgaggcttgtggtaatataaagtttgttccctatgaaacatgttatggaagttgtaaaatctactatgaaggtgaatatgaagaagatgataatt |
27341731 |
T |
|
| Q |
207 |
gtgaggttggtgggtgagtgt |
227 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
27341732 |
gtgaggttggtggatgagtgt |
27341752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 38424468 - 38424685
Alignment:
| Q |
7 |
tggtggagttgagaaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggt |
106 |
Q |
| |
|
|||||||||| || |||||||||||||||||| | | || ||||||||||||| | || ||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
38424468 |
tggtggagttaaggaaattcagaaacttcatgttgacaagaagcttgagaaatcgcttttttgttgtgaaaggattgatgacattgaaggaggtgatggt |
38424567 |
T |
|
| Q |
107 |
ggatgtgaggcttgtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataatt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38424568 |
ggatgtgaggcttgtggtgatataaagtttgttccttgtgaaacatgttatggaaattgtaaaatctactatgaaggtgattatgaagaa---gataatt |
38424664 |
T |
|
| Q |
207 |
gtgaggttggtgggtgagtgt |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
38424665 |
gtgaggttggtgggtgagtgt |
38424685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 13544924 - 13545144
Alignment:
| Q |
7 |
tggtggagttgagaaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggt |
106 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| | || ||||||||||||||| ||||||||||||||| |||||||||||| |||||||| | || |
|
|
| T |
13544924 |
tggtagagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatgacattgaaggaggaggcagt |
13545023 |
T |
|
| Q |
107 |
ggatgtgaggcttgtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataatt |
206 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |||| ||||||| ||| |||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
13545024 |
ggatgtgaggcttgcggtgatataaagtttgttccttctgaaccatgttatggaagttgtaaaatctactatgaagatgattatgaaaaagatgataatt |
13545123 |
T |
|
| Q |
207 |
gtgaggttggtgggtgagtgt |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
13545124 |
gtgaggttggtgggtgagtgt |
13545144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 25456096 - 25455876
Alignment:
| Q |
7 |
tggtggagttgagaaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggt |
106 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||| | || ||||||||||||||| ||||||||||||||| |||||||| ||| |||||||||||||| |
|
|
| T |
25456096 |
tggttgagttgaggaaattcagaaagttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgatggcattaaaggaggtgatggt |
25455997 |
T |
|
| Q |
107 |
ggatgtgaggcttgtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataatt |
206 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| | |||||| || ||| ||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
25455996 |
ggatgtgagggatgtggtgatataaagtttgttccttgtaaaacattctatggaagttgtaaaatatactatgaaggtgattatgaagaagataataatt |
25455897 |
T |
|
| Q |
207 |
gtgaggttggtgggtgagtgt |
227 |
Q |
| |
|
|||||||| ||||||| |||| |
|
|
| T |
25455896 |
gtgaggtttgtgggtgggtgt |
25455876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 10 - 178
Target Start/End: Original strand, 21362078 - 21362246
Alignment:
| Q |
10 |
tggagttgagaaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggtgga |
109 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | || ||||||||| |||| ||||||||||||||| |||||| ||||| |||||||||||| ||||| |
|
|
| T |
21362078 |
tggagttgaggaaattcagaaacttcatgatgacaagaagcttgagtaattacttgattgttgtgaaaggattgacgacattgaaggaggtgatagtgga |
21362177 |
T |
|
| Q |
110 |
tgtgaggcttgtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactat |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||| ||||| ||| |||||||||||||||| |
|
|
| T |
21362178 |
tgtgaggcttgtggtgatataaagtttgttcgttgtgaaacgtgttatggaagttgtaaaatctactat |
21362246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 27188277 - 27188386
Alignment:
| Q |
7 |
tggtggagttgagaaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggt |
106 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| | || ||||||||||||||| ||||||||||||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
27188277 |
tggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaaggattaatgacattgaaggaggtgatggt |
27188376 |
T |
|
| Q |
107 |
ggatgtgagg |
116 |
Q |
| |
|
|||||||||| |
|
|
| T |
27188377 |
ggatgtgagg |
27188386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 27188399 - 27188457
Alignment:
| Q |
165 |
gtaaaatctactatgaaggtgattatgaagaagatgataattgtgaggttggtgggtga |
223 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27188399 |
gtaaaatctattatgaaggtgattatgaagaagatgataattgtgtggttggtgggtga |
27188457 |
T |
|
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Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 45765098 - 45764890
Alignment:
| Q |
10 |
tggagttgagaaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggtgga |
109 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| | || ||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
45765098 |
tggagttgaggaaatttagaaacttcatgatgacaagaagcttgagaaattgcttgattgttgtgaaatgattgatgacattgaaggaggtgatggtgga |
45764999 |
T |
|
| Q |
110 |
tgtgaggcttgtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataattgtg |
209 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45764998 |
tgtgaggcctgtggtgatataaaatttgttccttgtgaaacatgttatggaagttgtaaaatctactatgaaggtgattatgaagaagatgataattgtg |
45764899 |
T |
|
| Q |
210 |
aggttggtg |
218 |
Q |
| |
|
||||||||| |
|
|
| T |
45764898 |
aggttggtg |
45764890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 21857992 - 21858198
Alignment:
| Q |
21 |
aaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggtggatgtgaggcttg |
120 |
Q |
| |
|
|||||||||||||||||||| | || ||||||||| ||||| ||||| ||||||||| |||| ||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
21857992 |
aaattcagaaacttcatgatgacaagaagcttgaggaattgcttgatagttgtgaaaggattaatgacattaaaggaggtgatggtggatgtgagggttg |
21858091 |
T |
|
| Q |
121 |
tggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataattgtgaggttggtggg |
220 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21858092 |
tggtgatataaaatttgttccttgtgaaacatgttatgtaagttgtaaaatctactatgaaggtgattatgaagaagatgataattgtgaggttggcggg |
21858191 |
T |
|
| Q |
221 |
tgagtgt |
227 |
Q |
| |
|
||||||| |
|
|
| T |
21858192 |
tgagtgt |
21858198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 21913855 - 21914061
Alignment:
| Q |
21 |
aaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggtggatgtgaggcttg |
120 |
Q |
| |
|
|||||||||||||||||||| | || ||||||||| ||||| ||||| ||||||||| |||| ||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
21913855 |
aaattcagaaacttcatgatgacaagaagcttgaggaattgcttgatagttgtgaaaggattaatgacattaaaggaggtgatggtggatgtgagggttg |
21913954 |
T |
|
| Q |
121 |
tggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataattgtgaggttggtggg |
220 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21913955 |
tggtgatataaaatttgttccttgtgaaacatgttatgtaagttgtaaaatctactatgaaggtgattatgaagaagatgataattgtgaggttggcggg |
21914054 |
T |
|
| Q |
221 |
tgagtgt |
227 |
Q |
| |
|
||||||| |
|
|
| T |
21914055 |
tgagtgt |
21914061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 35194607 - 35194388
Alignment:
| Q |
7 |
tggtggagttgagaaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggt |
106 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| | || ||| ||||||||||| || |||||||||||| ||||||||| || ||||||||||||| | |
|
|
| T |
35194607 |
tggtggagttgaggaaattcagaaacttcatgatgacaagaagtttgagaaattgctttattgttgtgaaaggattgatgatattgaaggaggtgatg-t |
35194509 |
T |
|
| Q |
107 |
ggatgtgaggcttgtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||| |||||||||||| |||||||||||| ||||||||| ||||||||||||||| |||||||| |
|
|
| T |
35194508 |
ggatgtgaggcttgtggtgatataaaatttgttgcttgtgaaacatgttatgaaaattgtaaaatatactatgaaagtgattatgaagaaggtgataatt |
35194409 |
T |
|
| Q |
207 |
gtgaggttggtgggtgagtgt |
227 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
35194408 |
gtgaggttgatgggtgagtgt |
35194388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 7 - 153
Target Start/End: Complemental strand, 12595128 - 12594983
Alignment:
| Q |
7 |
tggtggagttgagaaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggt |
106 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| || ||||||||||||||| ||| ||||||||||| |||| |||| || ||||||||||||||| |
|
|
| T |
12595128 |
tggtggagttgaggaaattcagaaacttcatgatggcaagaagcttgagaaattgcttg-ttgttgtgaaaggattaatgaaattgaaggaggtgatggt |
12595030 |
T |
|
| Q |
107 |
ggatgtgaggcttgtggtgatataaagtttgttccttttgaaacatg |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12595029 |
ggatgtgaggcttgtggtgatataaagtttgttccttgtgaaacatg |
12594983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 227
Target Start/End: Complemental strand, 12594979 - 12594949
Alignment:
| Q |
197 |
gatgataattgtgaggttggtgggtgagtgt |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
12594979 |
gatgataattgtgaggttggtgggtgagtgt |
12594949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 9666072 - 9665867
Alignment:
| Q |
13 |
agttgagaaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggtggatgt |
112 |
Q |
| |
|
||||||| ||||||| ||||||||| || | || ||||||||||||||| ||||||||||||||| |||||| ||||| ||||||||||||||||||||| |
|
|
| T |
9666072 |
agttgaggaaattcataaacttcataatgacaagaagcttgagaaattgcttgattgttgtgaaaggattgacgacattgaaggaggtgatggtggatgt |
9665973 |
T |
|
| Q |
113 |
gaggcttgtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataattgtgagg |
212 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |||||||||| | ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9665972 |
gaagcttgtggtgatataaagtttgttccttgtgaaacatgtcatggaagttgtaaaatctactatgaagatgattatgaagaagatgataattgtgagg |
9665873 |
T |
|
| Q |
213 |
ttggtg |
218 |
Q |
| |
|
|||||| |
|
|
| T |
9665872 |
ttggtg |
9665867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 4963 - 4748
Alignment:
| Q |
7 |
tggtggagttgagaaaattcagaaacttcatgataataaaaagcttgagaaattgattgattgttgtgaaaagattgatgacatcgaaggaggtgatggt |
106 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| | || ||||||||||||||| ||||||| ||||||| ||||||| ||||||||||||||| |
|
|
| T |
4963 |
tggtggagttgaggaaattcagaaacttcatgatgacaagaagcttgagaaattgcttgattgctgtgaaaggattgatt-----gaaggaggtgatggt |
4869 |
T |
|
| Q |
107 |
ggatgtgaggcttgtggtgatataaagtttgttccttttgaaacatgttaaagaaattgtaaaatctactatgaaggtgattatgaagaagatgataatt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||| ||| |||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
4868 |
ggatgtgaggcttgtggtgatataaagtttgttccttgtaaaacatgttatggaagttgtaaaacatactatgaagatgattatgaagaagatgataatt |
4769 |
T |
|
| Q |
207 |
gtgaggttggtgggtgagtgt |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4768 |
gtgaggttggtgggtgagtgt |
4748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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