View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17275_low_42 (Length: 227)

Name: NF17275_low_42
Description: NF17275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17275_low_42
NF17275_low_42
[»] chr8 (8 HSPs)
chr8 (7-227)||(15000555-15000769)
chr8 (105-177)||(15164894-15164966)
chr8 (105-177)||(15077177-15077249)
chr8 (105-193)||(4506137-4506225)
chr8 (110-179)||(15751658-15751727)
chr8 (105-188)||(13033905-13033988)
chr8 (105-179)||(15053031-15053105)
chr8 (106-175)||(15214140-15214209)
[»] chr7 (2 HSPs)
chr7 (7-188)||(1626316-1626497)
chr7 (106-188)||(1617766-1617848)


Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 15000555 - 15000769
Alignment:
Q  7 gattcaaaatattattaatttatgttgctttgaaaatatgaaggatcaagaagtaaataaatctggagttttgtcatcaagatatgagaaaaaacacctc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  15000555 gattcaaaatattattaatttatgttgctttgaaaatatgaaggatcaagaagtaaataaatttggagttttgtcatcgagatatgagaaaaaacacctc 15000654  T
Q  107 tttcgaaaggccgaaataggagattggaaaaattacctttcccgttcaatggtagaaaaaatatccaaaatcacaaaagaaatgttaggtgaatcaggtc 206  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||    
T  15000655 tttcgaaaggccgaaataggagattggaaaaattatctttcccgttcaatggtagaaaaaatatccaaaatcacaaaagaaatgttagg------aggtc 15000748  T
Q  207 tctcatttgaagtgtgtcgaa 227  Q
    ||||||||||||| |||||||    
T  15000749 tctcatttgaagtttgtcgaa 15000769  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 15164966 - 15164894
Alignment:
Q  105 tctttcgaaaggccgaaataggagattggaaaaattacctttcccgttcaatggtagaaaaaatatccaaaat 177  Q
    |||||||||||||| || ||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||    
T  15164966 tctttcgaaaggccaaagtaggagattggaaaaattacctttccccttcaatggaagaaaaactatccaaaat 15164894  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 15077177 - 15077249
Alignment:
Q  105 tctttcgaaaggccgaaataggagattggaaaaattacctttcccgttcaatggtagaaaaaatatccaaaat 177  Q
    |||||||||||||| || ||| ||||||||||||||||||||||| |||||||| ||||||| | ||||||||    
T  15077177 tctttcgaaaggccaaagtagaagattggaaaaattacctttccccttcaatggaagaaaaactgtccaaaat 15077249  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 4506225 - 4506137
Alignment:
Q  105 tctttcgaaaggccgaaataggagattggaaaaattacctttcccgttcaatggtagaaaaaatatccaaaatcacaaaagaaatgtta 193  Q
    ||||| ||||||| ||| |||||||||||| |||||| ||||| | || ||||| ||||||| |||||||||||| | |||||| ||||    
T  4506225 tctttagaaaggcagaagtaggagattggataaattatctttctccttgaatggaagaaaaactatccaaaatcatagaagaaaagtta 4506137  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 15751658 - 15751727
Alignment:
Q  110 cgaaaggccgaaataggagattggaaaaattacctttcccgttcaatggtagaaaaaatatccaaaatca 179  Q
    |||||||| ||  ||||||||||||  || |||||||| | |||||||||||||||| ||||||||||||    
T  15751658 cgaaaggctgaggtaggagattggattaactacctttctccttcaatggtagaaaaactatccaaaatca 15751727  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 188
Target Start/End: Original strand, 13033905 - 13033988
Alignment:
Q  105 tctttcgaaaggccgaaataggagattggaaaaattacctttcccgttcaatggtagaaaaaatatccaaaatcacaaaagaaa 188  Q
    ||||||||||||  |||||||||||||||  ||||||| |||| | ||||||| |||||| | |||||||| ||| | ||||||    
T  13033905 tctttcgaaagggagaaataggagattgggtaaattacttttctccttcaatgatagaaagattatccaaagtcatagaagaaa 13033988  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 15053031 - 15053105
Alignment:
Q  105 tctttcgaaaggccgaaataggagattggaaaaattacctttcccgttcaatggtagaaaaaatatccaaaatca 179  Q
    ||||||||||||  |||||||| ||||||  ||||||| |||| | ||||||| |||||| | ||||||||||||    
T  15053031 tctttcgaaagggagaaataggggattgggtaaattacttttctccttcaatgatagaaagattatccaaaatca 15053105  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 15214209 - 15214140
Alignment:
Q  106 ctttcgaaaggccgaaataggagattggaaaaattacctttcccgttcaatggtagaaaaaatatccaaa 175  Q
    |||||||||||  |||||||| ||||||  |||||||||||||  |||||||||||| ||| | ||||||    
T  15214209 ctttcgaaagggagaaataggggattgggcaaattacctttcctcttcaatggtagagaaactttccaaa 15214140  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 188
Target Start/End: Complemental strand, 1626497 - 1626316
Alignment:
Q  7 gattcaaaatattattaatttatgttgctttgaaaatatgaa-ggatcaagaagtaaataaatctggagttttgtcatcaagatatgagaaaaaacacct 105  Q
    |||| ||||||| || ||||||||| |||||||||| ||||| ||||   |||| ||||||||||||||| |||  |   |  ||||| |||||  || |    
T  1626497 gattgaaaatataatcaatttatgtagctttgaaaagatgaaaggattg-gaagcaaataaatctggagtcttgggaaagatttatgacaaaaagtactt 1626399  T
Q  106 ctttcgaaaggccgaaataggagattggaaaaattacctttcccgttcaatggtagaaaaaatatccaaaatcacaaaagaaa 188  Q
    |||||||||||  |||||||| |||||||  ||||| ||||| | |||||||||||| ||  |||||||||||| | ||||||    
T  1626398 ctttcgaaagggagaaataggggattggattaattatctttctccttcaatggtagataagttatccaaaatcatagaagaaa 1626316  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 1617848 - 1617766
Alignment:
Q  106 ctttcgaaaggccgaaataggagattggaaaaattacctttcccgttcaatggtagaaaaaatatccaaaatcacaaaagaaa 188  Q
    |||||||||||| |||||||| |||||||  ||||| ||||| | |||||||||||| ||  | |||||||||| | ||||||    
T  1617848 ctttcgaaaggcagaaataggggattggattaattatctttctccttcaatggtagagaagctgtccaaaatcatagaagaaa 1617766  T

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