View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17275_low_5 (Length: 578)
Name: NF17275_low_5
Description: NF17275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17275_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 288 - 519
Target Start/End: Original strand, 47096814 - 47097046
Alignment:
| Q |
288 |
ttttggaatggccaagctgctaatcaaagacagaagtagaacaagcacaaatgttagagggacaatgggatatttggcaccagaatggctcaaaa-tgca |
386 |
Q |
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| T |
47096814 |
ttttggaatggcaaagctattaatgaatgacagaagtagaacaagcacaaatgttagagggacaatgggatatttggcaccagaatggctcaaaaatgcg |
47096913 |
T |
|
| Q |
387 |
cctatcactgcaaaagtggatatctacagctttggtgttctgttgcttgaaatattattttgcagaaggcacattgagttgcatcaagttgaggatggag |
486 |
Q |
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| T |
47096914 |
cctatcactgcaaaagtggatatctacagccttggtgtcatgttgcttgaaatcttattttgcaaaaggcacattgagttgaatcaaattgaagatggaa |
47097013 |
T |
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| Q |
487 |
cagaaggtggtgatgacatgatacttatagatt |
519 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
47097014 |
cagagggtggtgatgacatgatacttatagatt |
47097046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 37464149 - 37464255
Alignment:
| Q |
180 |
ctagcaggtacttaattctgtaattgtaactcttcattccaagtttaacaccatcatac---gaagcatatcactttttgcaagtaaactatagctcaaa |
276 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37464149 |
ctagcaggtacttaattctgtaattggaactcttcattccaagtttaacaccctcatactttcttgcatatcactttttgcaagtaaactatagctcaaa |
37464248 |
T |
|
| Q |
277 |
attaaag |
283 |
Q |
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||||||| |
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| T |
37464249 |
attaaag |
37464255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 180 - 292
Target Start/End: Original strand, 49021264 - 49021379
Alignment:
| Q |
180 |
ctagcaggtacttaattctgtaattgtaactcttcattccaagtttaacaccatcatacgaa---gcatatcactttttgcaagtaaactatagctcaaa |
276 |
Q |
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| T |
49021264 |
ctagcatgtacttaattctgtaattgtatctcttcattccatgtttagcaccatcatactttcttgcatatcactttttgcatgtaaactatagctcaaa |
49021363 |
T |
|
| Q |
277 |
attaaagcatgttttg |
292 |
Q |
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|||||||||||||||| |
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| T |
49021364 |
attaaagcatgttttg |
49021379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 180 - 286
Target Start/End: Complemental strand, 37589908 - 37589799
Alignment:
| Q |
180 |
ctagcaggtacttaattctgtaattgtaactcttcattccaagtttaacaccatcatac---gaagcatatcactttttgcaagtaaactatagctcaaa |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| ||||||||| || |
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| T |
37589908 |
ctagcaggtacttaattctgtaattgtaactcttcattccaagtttgacaccatcatactttcttgcatatcactttttgcatgtaacctatagctccaa |
37589809 |
T |
|
| Q |
277 |
attaaagcat |
286 |
Q |
| |
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|||||||||| |
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| T |
37589808 |
attaaagcat |
37589799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 180 - 292
Target Start/End: Complemental strand, 37426977 - 37426862
Alignment:
| Q |
180 |
ctagcaggtacttaattctgtaattgtaactcttcattccaagtttaacaccatcatacgaa---gcatatcactttttgcaagtaaactatagctcaaa |
276 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
37426977 |
ctagcatgtacttaattctgtaattgtatctcttcattccatgtttagcaccatcatactttcttgcatatcactttttgcatgtaaactatagctcaaa |
37426878 |
T |
|
| Q |
277 |
attaaagcatgttttg |
292 |
Q |
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|||||||||||||||| |
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| T |
37426877 |
attaaagcatgttttg |
37426862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 28182466 - 28182550
Alignment:
| Q |
9 |
aataattcttaaccttttttaaaatgatttgcatattcattatgcattttgg-tatacatattgtatcagactttttcctttgaa |
92 |
Q |
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||||||||| ||| |||||||||||||||| |||||||||||| |||||||| ||||| ||||||||||| ||||| ||||||| |
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| T |
28182466 |
aataattctcaactttttttaaaatgatttacatattcattatacattttggccatacacattgtatcagaattttttctttgaa |
28182550 |
T |
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