View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17275_low_7 (Length: 551)
Name: NF17275_low_7
Description: NF17275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17275_low_7 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 14 - 533
Target Start/End: Original strand, 17651427 - 17651946
Alignment:
| Q |
14 |
gaagaaaaaaggaacgaaaaaagtataagttgataattcaaaatcaaattattaaagattttgttccaattcattttatatagtacagtaataattcagt |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
17651427 |
gaagaaaaaaggaacgaaaaaagtataagttgataattcaaaatcaaattattaaagattttgttccaattcattttatatagtacagtaataattcact |
17651526 |
T |
|
| Q |
114 |
aatacaatgatttagaactatatttcgaatcacagtacagtatttcatttaaatatcttgtatgatattattgacccgcccaagtattctattacaattc |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
17651527 |
aatacaatgatttagaactatatttcgaatcacagtacagtatttcatttaaatatcttgtatgatattattga-----ccaagtattctattacaattc |
17651621 |
T |
|
| Q |
214 |
catttatggtctcactctattattaatttaatagcaatggaattgaattaatacttcaattccattgaaacctgggaaaaactcctaatttcacggaggc |
313 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17651622 |
catttatggtgtcactctattattaatttaatagcaatggaattgaattaatacttcaattccattgaaacctgggaaaaactcctaatttcacggaggc |
17651721 |
T |
|
| Q |
314 |
caaatccacctttcttaaattaatttgctc----nnnnnnnncgaacttattctagtctaattagaaag-nnnnnnnncgaacgaagagggatttaatca |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||| |||||||||||||||||||||| |
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|
| T |
17651722 |
caaatccacctttcttaaattaatttgctcttttttttttctcgaatttattctagtttaattagaaagaaaaaaaaacgaacgaagagggatttaatca |
17651821 |
T |
|
| Q |
409 |
cagatattttattggatctctaatctttgtcacccctttgccgtgccaataactagaatcnnnnnnnggggaatgtcaatgcatccgggaataaacgatt |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
17651822 |
cagatattttattggatctctaatctttgtcacccctttcccgtgccaataactagaatcaaaaaaaggggaatgtcaatgcatccgggaataaacgatt |
17651921 |
T |
|
| Q |
509 |
gatttctatcaagagacctgctaga |
533 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
17651922 |
gatttctatcaagagacctgctaga |
17651946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 33343190 - 33343372
Alignment:
| Q |
14 |
gaagaaaaaaggaacgaaaaaagtataagttgataattcaaaatcaaattattaaagattttgttccaattcattttatatagtacagtaataattcagt |
113 |
Q |
| |
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||||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||| |||| |
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| T |
33343190 |
gaagaaaaaaggaacaaaaaaaacataagttgataattcaaaattaaattatgaaagattttgttccaattaattttatatagta-----------cagt |
33343278 |
T |
|
| Q |
114 |
aatacaatgatttagaactatatttcgaatcacagtacagta-------tttcatttaaatatcttgtatgatattattgacccgcccaagtat |
200 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33343279 |
aatacaatgatttagaactatatttcaaatcacagtacaatatttcatttttcatttaaacatcttgtatgatattattgacccgcccaagtat |
33343372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 14 - 505
Target Start/End: Complemental strand, 18328716 - 18328209
Alignment:
| Q |
14 |
gaagaaaaaaggaacgaaaaaagtataagttgataattcaaaatcaaattattaaagattttgttccaattcattttatatagtacagtaataattcagt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18328716 |
gaagaaaaaaggaacgaaaaaagtataagttgataattcaaaatcaaattattaaagattttgttccaattcattttatatagtacagtaataatttagt |
18328617 |
T |
|
| Q |
114 |
aatacaatgatttagaactatatttcgaatcacagtacagtatttcattt-------aaatatcttgtatgatattattgacccgcccaagtattctatt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18328616 |
aatacaatgatttagaactatatttcgaatcacagtacagtatttcatttttcatttaaatatcttgtatgatattattgacccgcccaagtattctatt |
18328517 |
T |
|
| Q |
207 |
acaattccatttatggtctcactctattattaatttaatagcaatggaattgaattaatacttcaattccattgaaacctgggaaaaactcctaatttca |
306 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18328516 |
acaattccatttagggtctcactctattattaatttaatagcaatggaattgaattaatacttcaattccattgaaacctgggaaaaactcctaatttca |
18328417 |
T |
|
| Q |
307 |
cggaggccaaatccacctttcttaaattaatttgc------tcnnnnnnnncgaacttattctagtctaattag---aaagnnnnnnnncgaacgaagag |
397 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||| ||||||||||| |
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| T |
18328416 |
cggaggccaaatccacctttcttaaattaatttgcttctttttttttttttcgaacttattctagtctaattagaaaaaaaaaaaaaaacgaacgaagag |
18328317 |
T |
|
| Q |
398 |
ggatttaatcacagatattttattggatctctaatctttgtcacccctttgccgtgccaataactagaatcnnnnnnnggggaatgtcaatgcatccggg |
497 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
18328316 |
ggatttattcacagatattttattggatctctaatctttgtcacccctttcccgtgccaataactagaatcaaaaaaaggggaatgtcaatgcatccggg |
18328217 |
T |
|
| Q |
498 |
aataaacg |
505 |
Q |
| |
|
|||||||| |
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|
| T |
18328216 |
aataaacg |
18328209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 292 - 533
Target Start/End: Original strand, 21689633 - 21689881
Alignment:
| Q |
292 |
aaactcctaatttcacggaggccaaatccacctttcttaaattaatttgctcnnnnnnnn---cgaacttattctagtctaattagaaagnnnnnnnn-- |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
21689633 |
aaactcctaatttcacggaggccaaatccacctttcttaaattaatttgctctttttttttttcgaacttattctagtctaattagaaaaaaaaaaaaaa |
21689732 |
T |
|
| Q |
387 |
--cgaacgaagagggatttaatcacagatattttattggatctctaatctttgtcacccctttgccgtgccaataactagaatcnnnnnnnggggaatgt |
484 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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|
| T |
21689733 |
aacgaacgaagagggatttattcacagatattttattggatctctaatctttgtcacccctttcccgtgccaataactagaatcaaaaaaaggggaatgt |
21689832 |
T |
|
| Q |
485 |
caatgcatccgggaataaacgattgatttctatcaagagacctgctaga |
533 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21689833 |
caatgcatccgggaataaacgattgatttctatcaagagacctgctaga |
21689881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 482 - 533
Target Start/End: Original strand, 18053180 - 18053231
Alignment:
| Q |
482 |
tgtcaatgcatccgggaataaacgattgatttctatcaagagacctgctaga |
533 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18053180 |
tgtcaatgcatccgggaataaacgattgatttctatcaagagacctgctaga |
18053231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 193; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 29 - 270
Target Start/End: Complemental strand, 48147305 - 48147058
Alignment:
| Q |
29 |
gaaaaaagtataagttgataattcaaaatcaaattattaaagattttgttccaattcattttatatagtacagtaataattcagtaatacaatgatttag |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
48147305 |
gaaaaaagtataagttgataattcaaaatcaaattattaaagattttgttccaattcattttatatagtacagtaataatttagtaatacaatgatttag |
48147206 |
T |
|
| Q |
129 |
aactatatttcgaatcacagtacagta-------tttcatttaaatatcttgtatgatattattgacccgcccaagtattctattacaattccatttatg |
221 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
48147205 |
aactatatttcgaatcacaatacagtaatttatttttcatttaaatatcttgtatgatattattgacccgcccaagtattctattacaattccatttttg |
48147106 |
T |
|
| Q |
222 |
gtctcactctattattaattt-aatagcaatggaattgaattaatacttc |
270 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
48147105 |
gtct--ctctattattaatttaaatagcaatggaattgaattaatacttc |
48147058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 34055917 - 34055844
Alignment:
| Q |
87 |
ttttatatagtacagtaataattcagtaatacaatgatttagaactatatttcgaatcacagtacagtatttca |
160 |
Q |
| |
|
|||||| |||||| | |||||||||||||||||| ||||| || ||||||||| |||||||||||| ||||||| |
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|
| T |
34055917 |
ttttatgtagtactgaaataattcagtaatacaacgatttcgagctatatttcaaatcacagtacaatatttca |
34055844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 453
Target Start/End: Complemental strand, 44578681 - 44578634
Alignment:
| Q |
406 |
tcacagatattttattggatctctaatctttgtcacccctttgccgtg |
453 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
44578681 |
tcacaaatattttattggatctctaatctttgtcacccctttcccgtg |
44578634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 128 - 186
Target Start/End: Original strand, 32513739 - 32513804
Alignment:
| Q |
128 |
gaactatatttcgaatcacagtacagta-------tttcatttaaatatcttgtatgatattattg |
186 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32513739 |
gaactatattttgaatcacagtacagtatttcatttttcatttaaatatcttgtatgatattattg |
32513804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 47816336 - 47816411
Alignment:
| Q |
85 |
cattttatatagtacagtaataattcagtaatacaatgatttagaactatatttcgaatcacagtacagtatttca |
160 |
Q |
| |
|
||||||| ||||||| |||||||||||| |||||||||||| |||| ||| |||||||||| | |||||||||| |
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|
| T |
47816336 |
cattttacatagtacggtaataattcagctatacaatgatttcaaactgtatatcgaatcacaatgcagtatttca |
47816411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 95
Target Start/End: Original strand, 44746827 - 44746879
Alignment:
| Q |
43 |
ttgataattcaaaatcaaattattaaagattttgttccaattcattttatata |
95 |
Q |
| |
|
||||||||||||| ||||||||| |||||||| ||| ||| | |||||||||| |
|
|
| T |
44746827 |
ttgataattcaaagtcaaattatgaaagatttcgtttcaactaattttatata |
44746879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 477 - 531
Target Start/End: Complemental strand, 264995 - 264941
Alignment:
| Q |
477 |
gggaatgtcaatgcatccgggaataaacgattgatttctatcaagagacctgcta |
531 |
Q |
| |
|
||||||| ||| |||||||||||||||||||| ||||||||||| | |||||||| |
|
|
| T |
264995 |
gggaatgacaaagcatccgggaataaacgattaatttctatcaataaacctgcta |
264941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 5933623 - 5933699
Alignment:
| Q |
30 |
aaaaaagtataagttgataattcaaaatcaaattattaaagattttgttccaattcattttatatagtacagtaata |
106 |
Q |
| |
|
||||||||| ||||| ||||||||||||| |||||| || |||| ||| |||| |||||||||| || ||||||| |
|
|
| T |
5933623 |
aaaaaagtacaagttaataattcaaaatcgaattatggaaaatttagttttaattaattttatataatatagtaata |
5933699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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