View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17275_low_8 (Length: 534)
Name: NF17275_low_8
Description: NF17275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17275_low_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 155; Significance: 5e-82; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 330 - 496
Target Start/End: Complemental strand, 14208069 - 14207903
Alignment:
| Q |
330 |
agataaactggtttggaattctgtgagtactcctatatctatactgcttattatagcgtgaaaactctcagcttcaggcttataggtatctaactcagcc |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14208069 |
agataaactggtttggaattctgtgagtactcttatatctatactgcttattatagcgtgaaaactctcagcttcaggcttataggtatctaactcagcc |
14207970 |
T |
|
| Q |
430 |
ttaggtatctactaaaaaatgctccaattgccatatggtgccctttgaggttaatgaaagcaattga |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14207969 |
ttaggtatctactaaaaaatgctccaattgacatatggtgccctttgaggttaatgaaagtaattga |
14207903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 94 - 248
Target Start/End: Complemental strand, 14208307 - 14208150
Alignment:
| Q |
94 |
gtaggatatactccgtcccgaaaggttgtactgacaaactactctccgttgccaacttccctggaatcgctctcttcgccctcctctgcacggagatgca |
193 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14208307 |
gtaggatatactccgtcccgaaaggtagtaccgacaaactactcttcgttgccaacttcactggaatcgctctcttcgccctcctctgcacggagatgca |
14208208 |
T |
|
| Q |
194 |
attcaaggacagatggattgtgtct---ccaagagttagttcaattcatcatcatcac |
248 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14208207 |
attcaaggacagatggattgtgtctctcccaagagttagttcaattcatcatcatcac |
14208150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 14208382 - 14208334
Alignment:
| Q |
19 |
ctaacaccattatgcaagggattgagaagagattaaacacggctcttga |
67 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| ||||| ||||||||| |
|
|
| T |
14208382 |
ctaacaccattatgcaaggtattgagaatagataaaacagggctcttga |
14208334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 5e-54; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 323 - 467
Target Start/End: Complemental strand, 2368651 - 2368503
Alignment:
| Q |
323 |
gcagaacagataaactggtttggaattctgtgagtactcctatatctatactgcttattatagcgtgaaaactctcagcttcaggcttatag----gtat |
418 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2368651 |
gcagaatagataaactggtttggaattctgtgagtactcttatatctatactatttattatagcgtgaaaactctcagcttcaggcttataattaagtat |
2368552 |
T |
|
| Q |
419 |
ctaactcagccttaggtatctactaaaaaatgctccaattgccatatgg |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2368551 |
ctaactcagccttaggtatctactaaaaaatgctccaattgacatatgg |
2368503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 94 - 213
Target Start/End: Complemental strand, 2368918 - 2368799
Alignment:
| Q |
94 |
gtaggatatactccgtcccgaaaggttgtactgacaaactactctccgttgccaacttccctggaatcgctctcttcgccctcctctgcacggagatgca |
193 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||| ||||||||||||| | |||||||| ||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
2368918 |
gtaggatatactccgttccgaaaggtagtactaacaaactactctctacttccaacttcatcggaatcgctctcttcgccctcatttgcacggagatgca |
2368819 |
T |
|
| Q |
194 |
attcaaggacagatggattg |
213 |
Q |
| |
|
|||||||| || |||||||| |
|
|
| T |
2368818 |
attcaagggcaaatggattg |
2368799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 2368999 - 2368951
Alignment:
| Q |
19 |
ctaacaccattatgcaagggattgagaagagattaaacacggctcttga |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
2368999 |
ctaacaccattatgcaagggattgagaagagataaaacagggctcttga |
2368951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 98 - 213
Target Start/End: Complemental strand, 42302694 - 42302579
Alignment:
| Q |
98 |
gatatactccgtcccgaaaggttgtactgacaaactactctccgttgccaacttccctggaatcgctctcttcgccctcctctgcacggagatgcaattc |
197 |
Q |
| |
|
|||||||||||| | ||||||| ||||| ||||||||||||| | |||||||||| | ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42302694 |
gatatactccgttctgaaaggtagtactaacaaactactctctgctgccaacttcaccggaatcgctctcttcgccctcctctacacggagatgcaattc |
42302595 |
T |
|
| Q |
198 |
aaggacagatggattg |
213 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
42302594 |
aaggacaaatggattg |
42302579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 348 - 465
Target Start/End: Complemental strand, 42302400 - 42302280
Alignment:
| Q |
348 |
ttctgtgagtactcctatatctatactgcttattatagcgtgaaaactctcagcttcaggcttatag----gtatctaactcagccttaggtatctacta |
443 |
Q |
| |
|
|||||||||||||| || ||||||||| ||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42302400 |
ttctgtgagtactcttacatctatactatttattatagcgtgaaaactcttagtttcaggcttataattaagtatctaactcagccttaggtatctact- |
42302302 |
T |
|
| Q |
444 |
aaaaatgctccaattgccatat |
465 |
Q |
| |
|
||| |||||||||||| ||||| |
|
|
| T |
42302301 |
aaagatgctccaattgacatat |
42302280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 42302773 - 42302725
Alignment:
| Q |
19 |
ctaacaccattatgcaagggattgagaagagattaaacacggctcttga |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
42302773 |
ctaacaccattatgcaagggattgagaagagataaaacaaggctcttga |
42302725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 1343477 - 1343391
Alignment:
| Q |
127 |
acaaactactctccgttgccaacttccctggaatcgctctcttcgccctcctctgcacggagatgcaattcaaggacagatggattg |
213 |
Q |
| |
|
||||||| |||||||| | || |||| |||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||| |
|
|
| T |
1343477 |
acaaactcctctccgtcgacaccttcactggaatcgctctcttcgccctcctccgcgcggagatgcaattcaaggacaaatggattg |
1343391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University