View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17276_high_1 (Length: 440)
Name: NF17276_high_1
Description: NF17276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17276_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 6 - 430
Target Start/End: Complemental strand, 26610280 - 26609856
Alignment:
| Q |
6 |
atttagattttaaaacaaattaaaatttatattgatatttagattgtttaatgttgatcgaacaattattaatatggcttattgtatttgtgattccaca |
105 |
Q |
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| T |
26610280 |
atttagattttaaaacaaattaaaatttatattgatatttagattgtttaatgttgatcgaacaattattaatatgatttattgtatttgtgattccacg |
26610181 |
T |
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| Q |
106 |
cgctataaatttcctatatatataggttgaatcatttgtttggttcaaacccggataaaggagaaaaaaccatttcgaaaaaaggtctaatcatttggtt |
205 |
Q |
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| T |
26610180 |
cactttaaatttcttatatatataggttgaatcatttgtttggttcaaatccggataatggagaaaaaactatttcgaaaaaaggtcgaatcatttggtt |
26610081 |
T |
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| Q |
206 |
gcattttgcaatagatgcaggatacaatccatgtgccatgtggttgctaaggttattgataatgactattcatgagctaccaaattagttaaactctcca |
305 |
Q |
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| T |
26610080 |
gcattttacaatagatgcaggatacaatccatgtgccatgtggttgctaaggttattgataatgactattcatgagctaccaaattagttaaactctcca |
26609981 |
T |
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| Q |
306 |
ctgagctggaaacttgaactgatttattgtgagatggatatatttgtttgatatgcatagattaaactataaaaatacctgatgggtcatgctgctgaaa |
405 |
Q |
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| T |
26609980 |
ctgagctggaaacttgaactgatttattgtgagatggatatatttgtttgatatgcatagattaaactataaaaatacctgatgggtcatgcagctgaaa |
26609881 |
T |
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| Q |
406 |
gagaaaggaacaattataacctatg |
430 |
Q |
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| T |
26609880 |
gagaaaggaacaattataacctatg |
26609856 |
T |
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