View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17276_high_4 (Length: 277)
Name: NF17276_high_4
Description: NF17276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17276_high_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 15 - 277
Target Start/End: Complemental strand, 7686141 - 7685887
Alignment:
| Q |
15 |
aatatcactcatcagtctaagaaaggttgaaaaaatccaattcatcaaatccataaaagacgttggagcattaataattcttaaaggtataatcagaatt |
114 |
Q |
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| T |
7686141 |
aatatcacccatcagtctaagaaaggttgaaaaaatccaattcatcaaatccataaaagacgttggagcattagtaagtcctaaaggtataaccagaatt |
7686042 |
T |
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| Q |
115 |
ttacaatgctcgtagcaggtgcaaaaagctgtctttgatatatgttccctcttacatcttaatctagtgatacccataccttaaatcaattttagaaaaa |
214 |
Q |
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| T |
7686041 |
ttacaatgcttgtagcaggtgcaaaaagttgtctttgatatatgttccctcttgcatcttcatcttgtgatacccata--------caattttagaaaaa |
7685950 |
T |
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| Q |
215 |
cacttaagttcttgaagttgatcaaacaactcagcaatgttgtaaatgatatttattctttac |
277 |
Q |
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| T |
7685949 |
cacttaagttcttgaagttgatcaaacaactcagcaatgttgtaaatgatatttattctttac |
7685887 |
T |
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Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 161
Target Start/End: Complemental strand, 14656535 - 14656389
Alignment:
| Q |
15 |
aatatcactcatcagtctaagaaaggttgaaaaaatccaattcatcaaatccataaaagacgttggagcattaataattcttaaaggtataatcagaatt |
114 |
Q |
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| T |
14656535 |
aatatcacccataggtctaagaaaggttgaaaaaatccaattcatcaaatccctaaaagacgttggagcattagtaagtcttaaaggtataaccagaatt |
14656436 |
T |
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| Q |
115 |
ttacaatgctcgtagcaggtgcaaaaagctgtctttgatatatgttc |
161 |
Q |
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| T |
14656435 |
ttacaatgctcgtagcatgtgcgaaaagttgtctttgatatatgttc |
14656389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 245
Target Start/End: Original strand, 9301848 - 9302046
Alignment:
| Q |
46 |
aaaatccaattcatcaaatccataaaagacgttggagcattaataattcttaaaggtataatcagaattttacaatgctcgtagcaggtgcaaaaagctg |
145 |
Q |
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| T |
9301848 |
aaaatccaactcatcaaatccataaaagatattagagcattagtaagcccaaaaggcataaccagaatttcataatgctcgcagcatgtgcaaaacgttg |
9301947 |
T |
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| Q |
146 |
tctttgatatatgttccctcttacatcttaatctagtgatacccataccttaaatcaattttagaaaaacacttaagttcttgaagttgatcaaacaact |
245 |
Q |
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| T |
9301948 |
acactggcatatgatccctctta-atcttcaactggtgatacccagactgcaattctatcttggaaaaacactaagctccttgaagttgatcaaacaact |
9302046 |
T |
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