View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17276_low_3 (Length: 332)
Name: NF17276_low_3
Description: NF17276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17276_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 104 - 296
Target Start/End: Original strand, 35507987 - 35508179
Alignment:
| Q |
104 |
taattgggaaagaaaaccgaacccttaagaaatgggtatgagggaaatcaatggccaaatgagagaagagttggtccatgtgtttggaagcttcacacca |
203 |
Q |
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| T |
35507987 |
taattgggaaagaaaaccgaacccttaagaaatgggtatgagggaaatcaatggccaaatgagagaagagttggtccatgtgtttggaagcttcacacca |
35508086 |
T |
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| Q |
204 |
tgacgcccagaagtgaagcaccgccggagaaccgccgcgaacaacctcatccaactccgactttgacttcacgtctcgcaccgaaccccccat |
296 |
Q |
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| T |
35508087 |
tgacgcccagaagtgaagcaccgccggagaaccgccgcgaaccacctcatccaactccgactttgacttcacgtctcgcaccgaaccacccat |
35508179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 35507884 - 35507920
Alignment:
| Q |
1 |
agcctcagatatctctggttgttcttcagcttcaacc |
37 |
Q |
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| T |
35507884 |
agcctcagatatctctggttgttcttcagcttcaacc |
35507920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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