View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17277_high_102 (Length: 291)
Name: NF17277_high_102
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_102 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 41735742 - 41736019
Alignment:
| Q |
1 |
aaagacaatcctcttaaagctaacttgactgaatgaggtgacactattgatgtggttaattataaattgtttggaatgggagctgggaggtgcatgatga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41735742 |
aaagacaatcctcttaaagctaacttgactgaatgaggtgacactattgatgtggttaattataaattgtttggaatgggagctgggaggtgcatgatga |
41735841 |
T |
|
| Q |
101 |
tatggattaccacaaacataactaattttcttttgcaggtgagattaataacatgaggaacataattgttattactattgtgattaggcttgtgatcatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41735842 |
tatggattaccacaaacataactaattttcttttgcaggtgagattaataacatgaggaacataattgttattactattgtgattaggcttgtgatcata |
41735941 |
T |
|
| Q |
201 |
actctttttgtgagaattattatgagtcttcagattttcttggtagctaaagccttcgccttgacagccttgctcttc |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41735942 |
actctttttgtgagaattattatgagtcttcagattttcttggtagctaaagccttcgccttgacagccttgctcttc |
41736019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University