View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_104 (Length: 287)
Name: NF17277_high_104
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_104 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 2650770 - 2650501
Alignment:
| Q |
18 |
aacactctgttaagataagaacaacataaaagataccaaaca----gaacccatcaacatctactagtcgtttccagaatcatccaccaacctcaacatt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2650770 |
aacactctgttaagataagaacaacataaaagataccaaacaaacagaacccatcaacatctactagtcgtttccagaatcatccacc----tcaacatt |
2650675 |
T |
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| Q |
114 |
atttattaattgaatatcttaaccttcaattggtgtcatgtttttaattctagaatggtccctatacaactcaaaagattgtcacactctaccctnnnnn |
213 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2650674 |
atttattaattgaatatcttaaccttcaattggtgacatgtttttaattctagaatggtccctatacaactcaaaagattgtcacactctaccctaaaaa |
2650575 |
T |
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| Q |
214 |
nngtaaagttgttaccgttattattagccagcaaagcaaataaacaatgaactttaactttttcaaattcccac |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2650574 |
aagtaaagttgttaccgttattattagccagcaaagcaaataaacaatgaactttaactttttcaaattcccac |
2650501 |
T |
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