View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_11 (Length: 634)
Name: NF17277_high_11
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 18 - 618
Target Start/End: Original strand, 2394364 - 2394964
Alignment:
| Q |
18 |
agatttcacatgaatttcattcggcaaggaaatgaatgtcaaaatgagtgttaagatcacttttgctaacattatgcaaggttgttaaaacctatgtttt |
117 |
Q |
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| T |
2394364 |
agatttcacatgaatttcattcggcaaggaaatgaatgtcaaaatgagtgttgagatcacttttgctaacattatgcaaagttgttaaaacctatgtttt |
2394463 |
T |
|
| Q |
118 |
agggctcgttaggagaagatatcatggttaagagggatttaaatctagagagattttcccagagttgtgttattgggacacatttttctacatcgtagtt |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2394464 |
agggctcgttaggagaagatatcatggctaagagggatttaaatatagagagattttcccggagttgtgttattgggacacatttttctacatcgtagtt |
2394563 |
T |
|
| Q |
218 |
gacatcaggtcaaatacatagtaggtttgtgtgtgcatgaaagccaaaacaagctaaacaaaaacatattccaagtgtattgtgtacggtggcggttgtc |
317 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
2394564 |
gacttcaggtcaaatacatagtaggtttgtgtgtgcatgaaagccaaaacaagctaaacaaaaacatattccaagtgtattgtatacggcggcggttgtc |
2394663 |
T |
|
| Q |
318 |
atcttttgtgtttgccaaatcatttctcattttgcaatcaaatattttagtaggtctcatctaaaagggattttacacttatctattttgaagttgaact |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2394664 |
atcttttgtgtttgccaaatcatttctcattttgcaatcaaatattttagtaggtctcatctaaaagggattttacacttatctattttgaagttgaact |
2394763 |
T |
|
| Q |
418 |
tagacatgtacatgttggatttgtagaaatctttcgaatatgtttgaaaattgaatagatatgtttaatagtgtaatggttaaaagatatgccttagatc |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2394764 |
tagacatgtacatgttggatttgtagaaatctttcgaatatgtttgaaaattgaatagataggtttaatagtgtaatggttaaaagatatgccttagatt |
2394863 |
T |
|
| Q |
518 |
agaaggttctaggtttgagttgcactataaatattgaagaaagatatttgtaagcacgttctgaattctaagggttttcctaccttatattagggcttca |
617 |
Q |
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||||||||||||||||| ||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
2394864 |
agaaggttctaggtttgggttccactttaaatattgaacaaagatatttgtaagcacgttctgaattctaagggttttcctaccttatactagagcttca |
2394963 |
T |
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| Q |
618 |
t |
618 |
Q |
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| T |
2394964 |
t |
2394964 |
T |
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