View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17277_high_111 (Length: 270)
Name: NF17277_high_111
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_111 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 11394269 - 11394042
Alignment:
| Q |
15 |
agagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttacgatatgcattacattggtaaccaaaacattggaattaacaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11394269 |
agagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttactatatgcattacattggtaaccaaaacattggaattaacaa |
11394170 |
T |
|
| Q |
115 |
tgcaaatattggaactatgcacgcttttcacaaagtttgatataaagggctggatcaatccaagggccataattagttggcgcctaaaactttaggatta |
214 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11394169 |
tgcaaacattggaactatgcacgcttttcacaaagtttgatataaagggctggatcaatccaagggccataattagttggcgcctaaaactttaggatta |
11394070 |
T |
|
| Q |
215 |
gggttttggagtgataattggagtgtta |
242 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
11394069 |
gggttttggagtgataattggagtgtta |
11394042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 46233766 - 46233993
Alignment:
| Q |
15 |
agagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttacgatatgcattacattggtaaccaaaacattggaattaacaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
46233766 |
agagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttactatatgcattacattggtaaccaaagcattggaattaacaa |
46233865 |
T |
|
| Q |
115 |
tgcaaatattggaactatgcacgcttttcacaaagtttgatataaagggctggatcaatccaagggccataattagttggcgcctaaaactttaggatta |
214 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46233866 |
tgcaaacattggaactatgcacgcgtttcacaaagtttgatataaagggctggatcaatccaagggccataattagttggcgcctaaaactttaggatta |
46233965 |
T |
|
| Q |
215 |
gggttttggagtgataattggagtgtta |
242 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
46233966 |
gggttttggagtgataattggagtgtta |
46233993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 9208821 - 9208594
Alignment:
| Q |
15 |
agagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttacgatatgcattacattggtaaccaaaacattggaattaacaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9208821 |
agagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttactatatgcattacattggtaaccaaagcattggaattaacaa |
9208722 |
T |
|
| Q |
115 |
tgcaaatattggaactatgcacgcttttcacaaagtttgatataaagggctggatcaatccaagggccataattagttggcgcctaaaactttaggatta |
214 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9208721 |
tgcaaacattggaactatgcacgcgtttcacaaagtttgatataaagggctggatcaatccaagggccataattagttggcgcctaaaactttaggatta |
9208622 |
T |
|
| Q |
215 |
gggttttggagtgataattggagtgtta |
242 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
9208621 |
gggttttggagtgataattggagtgtta |
9208594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 32440452 - 32440679
Alignment:
| Q |
15 |
agagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttacgatatgcattacattggtaaccaaaacattggaattaacaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32440452 |
agagagggaggagagaaagcgacgatgaagagggtgggtcggagaggttgttgttttactatatgcattacattggtaaccaaagcattggaattaacaa |
32440551 |
T |
|
| Q |
115 |
tgcaaatattggaactatgcacgcttttcacaaagtttgatataaagggctggatcaatccaagggccataattagttggcgcctaaaactttaggatta |
214 |
Q |
| |
|
|||||| |||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32440552 |
tgcaaacattgaaactatgcacacgtttcacaaagtttgatataaagggctggatcaatccaagggccataattagttggcgcctaaaactttaggatta |
32440651 |
T |
|
| Q |
215 |
gggttttggagtgataattggagtgtta |
242 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
32440652 |
gggttttggagtgataattggagtgtta |
32440679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 16262485 - 16262712
Alignment:
| Q |
15 |
agagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgttttacgatatgcattacattggtaaccaaaacattggaattaacaa |
114 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16262485 |
agagagggaggagagaaagcaacaatgaagagggtgggttggagaggttgttgttttactatatgcattacattggtaaccaaagcattggaattaacaa |
16262584 |
T |
|
| Q |
115 |
tgcaaatattggaactatgcacgcttttcacaaagtttgatataaagggctggatcaatccaagggccataattagttggcgcctaaaactttaggatta |
214 |
Q |
| |
|
|||||| |||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16262585 |
tgcaaacattgaaacaatgcacgcgtttcacaaagtttgatataaacggctggatcaatccaagggccataattagttggcgcctaaaactttaggatta |
16262684 |
T |
|
| Q |
215 |
gggttttggagtgataattggagtgtta |
242 |
Q |
| |
|
|||||||||||||||||||| ||||||| |
|
|
| T |
16262685 |
gggttttggagtgataattgaagtgtta |
16262712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 21592496 - 21592442
Alignment:
| Q |
15 |
agagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgtt |
69 |
Q |
| |
|
|||||||||| ||||| ||||| ||||| ||| ||||||| |||||||||||||| |
|
|
| T |
21592496 |
agagagggagaagagatagcgatgatgaggagtgtgggtttgagaggttgttgtt |
21592442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 21596613 - 21596559
Alignment:
| Q |
15 |
agagagggaggagagaaagcgacgatgaagagggtgggttggagaggttgttgtt |
69 |
Q |
| |
|
|||||||||| ||||| ||||| ||||| ||| ||||||| |||||||||||||| |
|
|
| T |
21596613 |
agagagggagaagagatagcgatgatgaggagtgtgggtttgagaggttgttgtt |
21596559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University