View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_112 (Length: 269)
Name: NF17277_high_112
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_112 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 12 - 254
Target Start/End: Complemental strand, 6117428 - 6117184
Alignment:
| Q |
12 |
atgaaaacaatataatcaaattgaatccatgaagttttttcaatagacacgtgaaatctgtttgtttcaacattttgtgttnnnnnnn-tcacttagaac |
110 |
Q |
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| T |
6117428 |
atgaaaacaatataatcaaattgaatcaatgaagttttttcaatagacacgcgaaatctgtttgtttcaacattttgtgttaaaagaaatcacttagaac |
6117329 |
T |
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| Q |
111 |
ttttcaaaactgttagannnnnnnnaaaggaaaaatattaaaagnnnnnnnnn-tcttaaaactactcaaatgagaatttattttgagtagtttctctaa |
209 |
Q |
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||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6117328 |
ttttcaaaactgttagattttttttaaagaaaaaatattaaaagaaaaaaaaaatcttaaaactactcaaatgagaatttattttgagtagtttctctaa |
6117229 |
T |
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| Q |
210 |
aaattatttttgaaaccaccaagagtgtgtgaaaagagtattact |
254 |
Q |
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| T |
6117228 |
aaattatttttgaaaccactaagagtgtgtgaaaagagtattact |
6117184 |
T |
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