View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_116 (Length: 263)
Name: NF17277_high_116
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_116 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 23 - 263
Target Start/End: Original strand, 33925724 - 33925964
Alignment:
| Q |
23 |
cagagaatgtacagaaaatattaactactttgcgtgaaattcgtagtttcttacctagttaaaatcatcttcatcgctaaaccctaacaattcgaaaaaa |
122 |
Q |
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| T |
33925724 |
cagagaatgtacagaaaatattaactactttgcgtgaaattcgtagtttcttacctagttaaaatcatcttcatcgctaaaccctaacaattcgaaaaaa |
33925823 |
T |
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| Q |
123 |
cgaaaacgtacagtttacaacgaaatcgttgattcgaccaattcagctttcagcgttcagcgagccatcatcttcttgaactcttcgaaattcacatttc |
222 |
Q |
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| T |
33925824 |
cgaaaacgtacagtttacaacgaaatcgttgattcgatcaattcagctttcagcgttcagtgagccatcatcttcttgaactcttcgaagttcacatttc |
33925923 |
T |
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| Q |
223 |
catcaccgtcaacatcaacattactaatcatcttcttacaa |
263 |
Q |
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| T |
33925924 |
catcaccgtcaacatcaacattactaatcatcttcttacaa |
33925964 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 17751253 - 17751312
Alignment:
| Q |
179 |
tcagcgagccatcatcttcttgaactcttcgaaattcacatttccatcaccgtcaacatc |
238 |
Q |
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| T |
17751253 |
tcagctagccatcatcttcttgaactcctcaaagttaacatttccatcaccgtcagcatc |
17751312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 17711621 - 17711559
Alignment:
| Q |
179 |
tcagcgagccatcatcttcttgaactcttcgaaattcacatttccatcaccgtcaacatcaac |
241 |
Q |
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| T |
17711621 |
tcagcgagtcatcatcttcttgaactcatcaaagttaacttttccatcaccgtcggcatcaac |
17711559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 30196323 - 30196376
Alignment:
| Q |
188 |
catcatcttcttgaactcttcgaaattcacatttccatcaccgtcaacatcaac |
241 |
Q |
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| T |
30196323 |
catcatcttcttaaactcttcaaaattcacattcccatcagcatcagcatcaac |
30196376 |
T |
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