View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17277_high_12 (Length: 612)

Name: NF17277_high_12
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17277_high_12
NF17277_high_12
[»] chr7 (4 HSPs)
chr7 (17-265)||(25801958-25802206)
chr7 (157-265)||(22710109-22710216)
chr7 (157-265)||(24806671-24806778)
chr7 (216-260)||(6113227-6113271)
[»] chr8 (10 HSPs)
chr8 (17-265)||(6826568-6826816)
chr8 (269-414)||(14118358-14118503)
chr8 (516-565)||(14118300-14118349)
chr8 (211-267)||(19476004-19476060)
chr8 (211-267)||(19546929-19546985)
chr8 (211-267)||(19585704-19585760)
chr8 (212-256)||(44004182-44004226)
chr8 (216-263)||(9255642-9255689)
chr8 (212-261)||(16247348-16247397)
chr8 (281-317)||(14093133-14093169)
[»] chr3 (5 HSPs)
chr3 (17-267)||(27963378-27963628)
chr3 (157-265)||(12412496-12412603)
chr3 (157-265)||(18150225-18150332)
chr3 (157-265)||(13792133-13792240)
chr3 (216-263)||(53682138-53682185)
[»] chr6 (3 HSPs)
chr6 (17-265)||(9823328-9823576)
chr6 (62-266)||(16847284-16847488)
chr6 (211-266)||(1710087-1710142)
[»] chr2 (2 HSPs)
chr2 (17-265)||(18360575-18360823)
chr2 (157-265)||(24221769-24221876)
[»] chr5 (2 HSPs)
chr5 (157-265)||(15274613-15274720)
chr5 (213-263)||(13451004-13451055)
[»] chr4 (3 HSPs)
chr4 (211-265)||(41418031-41418085)
chr4 (157-265)||(1773397-1773504)
chr4 (218-263)||(31943446-31943491)
[»] chr1 (1 HSPs)
chr1 (216-262)||(44196193-44196239)
[»] scaffold0695 (1 HSPs)
scaffold0695 (281-317)||(3281-3317)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 25802206 - 25801958
Alignment:
Q  17 taggtaaaggtcttttatattttcattgaatttcatagaaatacctacggtttatccgtaggtaaaggtctaaaacatacagtgacggtcaccttgcaat 116  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25802206 taggtaaaggtcttttatattttcattggatttcatagaaatacctacggtttatccgtatgtaaaggtctaaaacatacagtgacggtcaccttgcaat 25802107  T
Q  117 gaccgacggacaaaatttcattgccattcgttgagcaaactgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagc 216  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||| ||||||| ||||||||||||||||||||| | ||||| ||||||     
T  25802106 gaccgacggacaaaattccattgccattcgttgagcaaactacacggccaatgtagccgtggataaatgtttttgcgacctttaactacggaacaatagt 25802007  T
Q  217 ctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtagtg 265  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  25802006 ctatagtgacggtttttgtttgtcactacagatcaaatttcttgtagtg 25801958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 265
Target Start/End: Complemental strand, 22710216 - 22710109
Alignment:
Q  157 tgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagcctatagtgacggtttttgtctgtcactacaggtcaaattt 256  Q
    ||||| |||||| ||||||||||| || ||||| || || | || | |||||  |||||||| ||||||||||||||| | ||||||| ||||||| |||    
T  22710216 tgcacggccaatatggccgtgggtgaaagttttggccacatatacctacggaa-aatagcctttagtgacggtttttgcccgtcactagaggtcaagttt 22710118  T
Q  257 cttgtagtg 265  Q
    |||||||||    
T  22710117 cttgtagtg 22710109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 265
Target Start/End: Original strand, 24806671 - 24806778
Alignment:
Q  157 tgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagcctatagtgacggtttttgtctgtcactacaggtcaaattt 256  Q
    ||||| |||||| ||||||||||| || ||||| || || | || | |||||  |||||||| ||||||||||||||| | ||||||| ||||||| |||    
T  24806671 tgcacggccaatatggccgtgggtgaaagttttggccacatatacctacggaa-aatagcctttagtgacggtttttgcccgtcactagaggtcaagttt 24806769  T
Q  257 cttgtagtg 265  Q
    |||||||||    
T  24806770 cttgtagtg 24806778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 6113271 - 6113227
Alignment:
Q  216 cctatagtgacggtttttgtctgtcactacaggtcaaatttcttg 260  Q
    ||||||||||||| ||||| || |||||||| |||||||||||||    
T  6113271 cctatagtgacggattttggctatcactacaagtcaaatttcttg 6113227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 193; Significance: 1e-104; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 6826816 - 6826568
Alignment:
Q  17 taggtaaaggtcttttatattttcattgaatttcatagaaatacctacggtttatccgtaggtaaaggtctaaaacatacagtgacggtcaccttgcaat 116  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||| |||||    
T  6826816 taggtaaaggtcttttatattttcattggatttcatagaaatacctacagtttatccgtaggtaaaggtctaaaacatatagtgacggccacctagcaat 6826717  T
Q  117 gaccgacggacaaaatttcattgccattcgttgagcaaactgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagc 216  Q
    |||  |||||||||||| | ||||||||||||||| ||||||||| ||||| |||| ||||||||||||||||||||||||||||| |||||||||||||    
T  6826716 gacatacggacaaaattccgttgccattcgttgagtaaactgcacggccaaagtggtcgtgggtaaatgtttttgcgacctttagctacggagcaatagc 6826617  T
Q  217 ctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtagtg 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6826616 ctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtagtg 6826568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 269 - 414
Target Start/End: Complemental strand, 14118503 - 14118358
Alignment:
Q  269 tgacattgagtcagtaagccatttgtttgcaacatgtctaaagacttgggaaatttaggaaactattttcaatggttgcaatggatagataccggttggg 368  Q
    |||| |||||||||||||||||||||||||||||||||   ||||||||||||||  | ||| ||||||||||||||| |||||||||||||||||||||    
T  14118503 tgaccttgagtcagtaagccatttgtttgcaacatgtccggagacttgggaaattcggaaaagtattttcaatggttggaatggatagataccggttggg 14118404  T
Q  369 gacgcgaaatatgtagcggtaaaaattaggaaaagtgtctcactta 414  Q
    |||||||| ||||||||||  |||||| | |||| |||| ||||||    
T  14118403 gacgcgaagtatgtagcggagaaaattggaaaaaatgtcacactta 14118358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 516 - 565
Target Start/End: Complemental strand, 14118349 - 14118300
Alignment:
Q  516 gtgtctatcatgatcttggtttatttgccgagaaggtagaaacaaaaact 565  Q
    ||||| ||||||||||||||||||||| || |||||||||||||||||||    
T  14118349 gtgtcgatcatgatcttggtttatttgtcgggaaggtagaaacaaaaact 14118300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 19476060 - 19476004
Alignment:
Q  211 aatagcctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtagtgca 267  Q
    |||||||| ||||||||||||||| | ||||||| ||||||| ||||||||||||||    
T  19476060 aatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgca 19476004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 19546985 - 19546929
Alignment:
Q  211 aatagcctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtagtgca 267  Q
    |||||||| ||||||||||||||| | ||||||| ||||||| ||||||||||||||    
T  19546985 aatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgca 19546929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 19585704 - 19585760
Alignment:
Q  211 aatagcctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtagtgca 267  Q
    |||||||| ||||||||||||||| | ||||||| ||||||| ||||||||||||||    
T  19585704 aatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgca 19585760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 44004226 - 44004182
Alignment:
Q  212 atagcctatagtgacggtttttgtctgtcactacaggtcaaattt 256  Q
    ||||||||| |||||||||||||||| |||||||| |||||||||    
T  44004226 atagcctattgtgacggtttttgtctctcactacatgtcaaattt 44004182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 9255689 - 9255642
Alignment:
Q  216 cctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtag 263  Q
    ||||||||||||| ||||| ||||||||| | ||||||||||||||||    
T  9255689 cctatagtgacggattttggctgtcactataagtcaaatttcttgtag 9255642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 16247397 - 16247348
Alignment:
Q  212 atagcctatagtgacggtttttgtctgtcactacaggtcaaatttcttgt 261  Q
    ||||||| ||||||||||||||| | ||||||| ||||||| ||||||||    
T  16247397 atagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgt 16247348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 281 - 317
Target Start/End: Complemental strand, 14093169 - 14093133
Alignment:
Q  281 agtaagccatttgtttgcaacatgtctaaagacttgg 317  Q
    |||||||||||||||||||||||||| | ||||||||    
T  14093169 agtaagccatttgtttgcaacatgtccagagacttgg 14093133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 27963628 - 27963378
Alignment:
Q  17 taggtaaaggtcttttatattttcattgaatttcatagaaatacctacggtttatccgtaggtaaaggtctaaaacatacagtgacggtcaccttgcaat 116  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||| |||||    
T  27963628 taggtaaaggtcttttatattttcattggatttcatagaaatacctacggtttatccgtaggtaaaggtctaaaacatatagtgacgaccacctagcaat 27963529  T
Q  117 gaccgacggacaaaatttcattgccattcgttgagcaaactgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagc 216  Q
    |||  |||||||||||| | ||||||||||||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||||| || ||||||||||    
T  27963528 gacatacggacaaaattccgttgccattcgttgagtaaactgcacggccaaagtggctgtgggtaaatgtttttgcgacctttagctacagagcaatagc 27963429  T
Q  217 ctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtagtgca 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27963428 ctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtagtgca 27963378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 265
Target Start/End: Complemental strand, 12412603 - 12412496
Alignment:
Q  157 tgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagcctatagtgacggtttttgtctgtcactacaggtcaaattt 256  Q
    ||||| ||||||||||| |||||| || ||||| || || | || | |||||  |||||||| ||||||||||||||| | ||||||| ||||||| |||    
T  12412603 tgcacggccaatgtggctgtgggtgaaagttttggccacatatacctacggaa-aatagcctttagtgacggtttttgcccgtcactagaggtcaagttt 12412505  T
Q  257 cttgtagtg 265  Q
    |||||||||    
T  12412504 cttgtagtg 12412496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 265
Target Start/End: Complemental strand, 18150332 - 18150225
Alignment:
Q  157 tgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagcctatagtgacggtttttgtctgtcactacaggtcaaattt 256  Q
    ||||| |||||| ||||||||||| || ||||| || || | || | |||||  |||||||| ||||||||||||||| | ||||||| ||||||| |||    
T  18150332 tgcacggccaatatggccgtgggtgaaagttttggccacatatacctacggaa-aatagcctttagtgacggtttttgcccgtcactagaggtcaagttt 18150234  T
Q  257 cttgtagtg 265  Q
    |||||||||    
T  18150233 cttgtagtg 18150225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 265
Target Start/End: Complemental strand, 13792240 - 13792133
Alignment:
Q  157 tgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagcctatagtgacggtttttgtctgtcactacaggtcaaattt 256  Q
    ||||| |||||||||||||||| | || ||||| || || | || | |||||  |||||||| ||||||||||||||| | ||||||  ||||||| |||    
T  13792240 tgcacggccaatgtggccgtggatgaaagttttggccacatatacctacggaa-aatagcctttagtgacggtttttgcccgtcacttgaggtcaagttt 13792142  T
Q  257 cttgtagtg 265  Q
    |||||||||    
T  13792141 cttgtagtg 13792133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 53682185 - 53682138
Alignment:
Q  216 cctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtag 263  Q
    ||||||||||||| ||||| ||||||||| | ||||||||||||||||    
T  53682185 cctatagtgacggattttggctgtcactaaaagtcaaatttcttgtag 53682138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 9823328 - 9823576
Alignment:
Q  17 taggtaaaggtcttttatattttcattgaatttcatagaaatacctacggtttatccgtaggtaaaggtctaaaacatacagtgacggtcaccttgcaat 116  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||| |||||    
T  9823328 taggtaaaggtcttttatattttcattggatttcatagaaatacctacagtttatccgtaggtaaaggtctaaaacatatagtgacggccacctagcaat 9823427  T
Q  117 gaccgacggacaaaatttcattgccattcgttgagcaaactgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagc 216  Q
    |||  |||||||||||| | ||||||||||||||| ||||||||| ||||| |||| ||||||||||||||||||||||||||||| |||||||||||||    
T  9823428 gacatacggacaaaattccgttgccattcgttgagtaaactgcacggccaaagtggtcgtgggtaaatgtttttgcgacctttagctacggagcaatagc 9823527  T
Q  217 ctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtagtg 265  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9823528 ctatagtgacggtttttatctgtcactacaggtcaaatttcttgtagtg 9823576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 62 - 266
Target Start/End: Complemental strand, 16847488 - 16847284
Alignment:
Q  62 tacggtttatccgtaggtaaaggtctaaaacatacagtgacggtcaccttgcaatgaccgacggacaaaatttcattgccattcgttgagcaaactgcac 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16847488 tacggtttatccgtaggtaaaggtctaaaacatacagtgacggtcaccttacaatgaccgacggacaaaattccattgccattcgttgagcaaactgcac 16847389  T
Q  162 agccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagcctatagtgacggtttttgtctgtcactacaggtcaaatttcttgt 261  Q
     |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16847388 ggccaatgtggccgtgggtaaatgtttttgcgacctttagctacggagcaatagcctatagtgacggtttttgtctgtcactacaggtcaaatttcttgt 16847289  T
Q  262 agtgc 266  Q
    |||||    
T  16847288 agtgc 16847284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 1710087 - 1710142
Alignment:
Q  211 aatagcctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtagtgc 266  Q
    |||||||| ||||||||||||||| | ||||||| ||||||| |||||||||||||    
T  1710087 aatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgc 1710142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 177; Significance: 4e-95; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 18360823 - 18360575
Alignment:
Q  17 taggtaaaggtcttttatattttcattgaatttcatagaaatacctacggtttatccgtaggtaaaggtctaaaacatacagtgacggtcaccttgcaat 116  Q
    ||||||||||||||| ||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||    
T  18360823 taggtaaaggtctttgatattttcattgggtctcatagaaatacctacggtttatccgtaggtaaaggtctaaaacatatagtgacggccacctagcaat 18360724  T
Q  117 gaccgacggacaaaatttcattgccattcgttgagcaaactgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagc 216  Q
    ||| || ||| ||||||   ||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  18360723 gacagatggataaaattctgttgccattcgttgagcaaactgcacagtcagtgtggccgtgggtaaatatttttgcgaccttcagctacggagcaatagc 18360624  T
Q  217 ctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtagtg 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18360623 ctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtagtg 18360575  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 265
Target Start/End: Complemental strand, 24221876 - 24221769
Alignment:
Q  157 tgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagcctatagtgacggtttttgtctgtcactacaggtcaaattt 256  Q
    ||||| |||||| ||||||||||| || ||||| || || | || | |||||  |||||||| ||||||||||||||| | ||||||| ||||||| |||    
T  24221876 tgcacggccaatatggccgtgggtgaaagttttggccacatatacctacggaa-aatagcctttagtgacggtttttgcccgtcactagaggtcaagttt 24221778  T
Q  257 cttgtagtg 265  Q
    |||||||||    
T  24221777 cttgtagtg 24221769  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 157 - 265
Target Start/End: Complemental strand, 15274720 - 15274613
Alignment:
Q  157 tgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagcctatagtgacggtttttgtctgtcactacaggtcaaattt 256  Q
    ||||| |||||| ||||||||||| || ||||| || || | || | |||||  |||||||| ||||||||||||||| | ||||||| ||||||| |||    
T  15274720 tgcacggccaatatggccgtgggtgaaagttttggccacatatacctacggaa-aatagcctttagtgacggtttttgcccgtcactagaggtcaagttt 15274622  T
Q  257 cttgtagtg 265  Q
    |||||||||    
T  15274621 cttgtagtg 15274613  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 13451004 - 13451055
Alignment:
Q  213 tagcctatagtgacggtttttgtctgtcactac-aggtcaaatttcttgtag 263  Q
    |||||| ||||||||| |||||||||||||||| ||||||||||||||||||    
T  13451004 tagcctgtagtgacgggttttgtctgtcactacaaggtcaaatttcttgtag 13451055  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 265
Target Start/End: Original strand, 41418031 - 41418085
Alignment:
Q  211 aatagcctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtagtg 265  Q
    |||||||| ||||||||||||||| | ||||||| ||||||| ||||||||||||    
T  41418031 aatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 41418085  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 265
Target Start/End: Complemental strand, 1773504 - 1773397
Alignment:
Q  157 tgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagcctatagtgacggtttttgtctgtcactacaggtcaaattt 256  Q
    ||||| |||||||||||||||||| || ||||| || || | || | | |||  |||||||| |||||| |||||||| | ||||||| ||||||| |||    
T  1773504 tgcacggccaatgtggccgtgggtgaaagttttggccacatatacctatggaa-aatagcctttagtgatggtttttgcccgtcactagaggtcaagttt 1773406  T
Q  257 cttgtagtg 265  Q
    |||||||||    
T  1773405 cttgtagtg 1773397  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 31943491 - 31943446
Alignment:
Q  218 tatagtgacggtttttgtctgtcactacaggtcaaatttcttgtag 263  Q
    ||||||||||| | ||| ||||||||||| ||||||||||||||||    
T  31943491 tatagtgacggatattggctgtcactacaagtcaaatttcttgtag 31943446  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 44196239 - 44196193
Alignment:
Q  216 cctatagtgacggtttttgtctgtcactacaggtcaaatttcttgta 262  Q
    ||||||||||||| ||||| ||||||||| | |||||||||||||||    
T  44196239 cctatagtgacggattttggctgtcactaaaagtcaaatttcttgta 44196193  T

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Target: scaffold0695 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0695
Description:

Target: scaffold0695; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 281 - 317
Target Start/End: Original strand, 3281 - 3317
Alignment:
Q  281 agtaagccatttgtttgcaacatgtctaaagacttgg 317  Q
    |||||||||||||||||||||||||| | ||||||||    
T  3281 agtaagccatttgtttgcaacatgtccagagacttgg 3317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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