View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_125 (Length: 252)
Name: NF17277_high_125
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_125 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 33925961 - 33926195
Alignment:
| Q |
1 |
acaatcattcaacgagcatttctcaccgagtttcatcaaaacagcgtgcaattcattagcagaaatcaaaccattcttatcaagatcgtaaagatcaaaa |
100 |
Q |
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| T |
33925961 |
acaatcattcaacgagcatttctcaccgagtttcatcaaaacagcgtgcaattcattagcagaaatcaaaccattcttatcaagatcgtaaagatcaaaa |
33926060 |
T |
|
| Q |
101 |
gcatcacgaagctcgctagattcatcttttccaggttcagtacagtgaaaatcagcgaattctttcagatcaatgaaaccgtcgccgttttgatcgagtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33926061 |
gcatcacgaagctcgctagattcatcttttccaggttcagtgcagtgaaaatcagcgaattctttcagatcaatgaaaccgtcgccgttttgatcgagtt |
33926160 |
T |
|
| Q |
201 |
cttccatcatgcgtttcacttcttctgatgtagtt |
235 |
Q |
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| T |
33926161 |
cttccatcatgcgtttcacttcttctgatgtagtt |
33926195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 1893150 - 1893072
Alignment:
| Q |
144 |
agtgaaaatcagcgaattctttcagatcaatgaaaccgtcgccgttttgatcgagttcttccatcatgcgtttcacttc |
222 |
Q |
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| T |
1893150 |
agtggaaatcggtgaattctttgagatcaatgtaaccgtcgccgttctgatcaatttgttccatcatgcgttttacttc |
1893072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 1892682 - 1892758
Alignment:
| Q |
146 |
tgaaaatcagcgaattctttcagatcaatgaaaccgtcgccgttttgatcgagttcttccatcatgcgtttcacttc |
222 |
Q |
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| T |
1892682 |
tgaaattcagtgaattctttgagatcaatgtaactgtcgccgttctgatcaatttgttccatcatgcgttttacttc |
1892758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 17711389 - 17711343
Alignment:
| Q |
143 |
cagtgaaaatcagcgaattctttcagatcaatgaaaccgtcgccgtt |
189 |
Q |
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||||| ||||||||||||||||| ||||| ||| ||||||||||||| |
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| T |
17711389 |
cagtggaaatcagcgaattctttgagatctatgtaaccgtcgccgtt |
17711343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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