View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_129 (Length: 250)
Name: NF17277_high_129
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_129 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 40603600 - 40603362
Alignment:
| Q |
1 |
cgacattccttcactaccattgagaaaaagagaagggaaggaaagaaggcatcttgtttgttcgtacccaatcgtgaatcaaatcgtccaacagctgacg |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40603600 |
cgacattccttcgctaccattgagaaaaagagaagggaaggaaagaaggcatcttgtttgttcgtacccaatcgtgaatcaaatcgtccaacagctgacg |
40603501 |
T |
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| Q |
101 |
gggctaggctaactagcagtggtgttgcgtcacaggtataagcagacgcgggggagatgcaggattttgcgcatcaagcggcggagtcttagaagaagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40603500 |
gggctaggctaactagcagtggtgttgcgtcacaggtataagcagacgcgggggagatgcaggattttgcgcatcaagcggcggagtcttagaagaagtt |
40603401 |
T |
|
| Q |
201 |
tgctatagttagatgcttatcttttgttcgtgccttcat |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
40603400 |
tgctatagttagatgcttatcttttgttcgtgccttcat |
40603362 |
T |
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