View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_141 (Length: 245)
Name: NF17277_high_141
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_141 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 3651176 - 3651397
Alignment:
| Q |
16 |
aaatggtgtgagagtttcaatcaaattctatcaaataatattttctttataatcctttgataatttactgtcatgtgtatacaa-tttttaactgaatgt |
114 |
Q |
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| T |
3651176 |
aaatggtgtgagagtttttatcaaattctatcaaataatattttctttataatcctttgataatttactgtcatgtgtatacaaatttttaactgaaagt |
3651275 |
T |
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| Q |
115 |
aaca--cttagtaaacgacacacatggggtccctactcaaaatctaggcagtaaaacgtgtcgtgaagaacaaacagacaaatgatcaggtacacacacc |
212 |
Q |
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| T |
3651276 |
aaaaaacttagtaaacgacacacatggggtccctactcaaaatctaggcagtaaaacgtgtcgtgaagaagaaacagacaaatgatcaggtacacacacc |
3651375 |
T |
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| Q |
213 |
actgacaatattattctttctt |
234 |
Q |
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|||||||||||||||||||||| |
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| T |
3651376 |
actgacaatattattctttctt |
3651397 |
T |
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