View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17277_high_153 (Length: 237)
Name: NF17277_high_153
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_153 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 11191897 - 11192028
Alignment:
| Q |
1 |
tttgcatcaattggaaggtcaaagcaatgattctgccaagacaacagagggcactgattctggttttaagaaaattcaactggatcaatcaatcagatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||| |
|
|
| T |
11191897 |
tttgcatcaattggaaggtcaaagcaatgattctgccaagacaacagagggcactgattctggttttaagaaaattcaactgaatcaatccataagatat |
11191996 |
T |
|
| Q |
101 |
gcttctgggcatcacattgacaacaggcttag |
132 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |
|
|
| T |
11191997 |
gcttctggggatcacattgacaacaggcttag |
11192028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 11192024 - 11192088
Alignment:
| Q |
173 |
cttagtagattacctccatgcagtgagtgtgatctatactatgtcaatcgggataccctattttc |
237 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11192024 |
cttagtagattacctccatgtagtgagtgtgatctatactatgtcaatcgggataccctattttc |
11192088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 10308872 - 10308809
Alignment:
| Q |
1 |
tttgcatcaattggaaggtcaaagcaatgattctgccaagacaacagagggcactgattctggt |
64 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10308872 |
tttgcatcaactggaaggtcaaagcaacgattctgccaaggcaacagagggcactgattctggt |
10308809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 10308401 - 10308346
Alignment:
| Q |
182 |
ttacctccatgcagtgagtgtgatctatactatgtcaatcgggataccctattttc |
237 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10308401 |
ttacctccatgtagtgagtgcgatctatactatgtcaatcgggataccctcttttc |
10308346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 10308605 - 10308490
Alignment:
| Q |
62 |
ggttttaagaaaattcaactggatcaatcaatcagatatgcttctgggcatcacattgacaacaggcttagcacattacttttcttagatgtttcgaatg |
161 |
Q |
| |
|
||||||||||||||| ||||| | |||| |||||||||||||||||| ||| | |||| | | |||||| ||| |||||| |||||||||||| |||| |
|
|
| T |
10308605 |
ggttttaagaaaattgaactgagtgaatccatcagatatgcttctggggatcccgttgaaagctggcttaatacactactttgcttagatgtttcaaatg |
10308506 |
T |
|
| Q |
162 |
cccttcttaatcttag |
177 |
Q |
| |
|
|| | | ||||||||| |
|
|
| T |
10308505 |
ccatccctaatcttag |
10308490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 38431025 - 38430982
Alignment:
| Q |
194 |
agtgagtgtgatctatactatgtcaatcgggataccctattttc |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38431025 |
agtgagtgtgatctatactatgtcaatcgggatactctattttc |
38430982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 163
Target Start/End: Complemental strand, 38431239 - 38431141
Alignment:
| Q |
65 |
tttaagaaaattcaactggatcaatcaatcagatatgcttctgggcatcacattgacaacaggcttagcacattacttttcttagatgtttcgaatgcc |
163 |
Q |
| |
|
||||||||||| ||||| | |||| |||||||||||| ||||| ||| ||||| | | |||||| ||||||||||| |||||||||||| |||||| |
|
|
| T |
38431239 |
tttaagaaaatagaactgagtgaatccatcagatatgctcctggggatcctattgaaagctggcttaacacattactttgcttagatgtttcaaatgcc |
38431141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University