View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_157 (Length: 235)
Name: NF17277_high_157
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_157 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11191818 - 11191598
Alignment:
| Q |
1 |
cgaccaataattcaacttgcgagagcttttgtttgtctttcatgtgacgcttgtccttgtaacaccattaaacacttagactagatttgatatgtgtttg |
100 |
Q |
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| T |
11191818 |
cgaccaataattcaacttgcgagagcttttgtttgtctttcatgtgacgcttgtccttgtaacaccattaaacacttagactagatttgatatgtgtttg |
11191719 |
T |
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| Q |
101 |
gctaagcatgaaatttagatttacaatcctggtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgata |
200 |
Q |
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| T |
11191718 |
gctaagcatgaaatttagatttacaatcgtggtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgata |
11191619 |
T |
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| Q |
201 |
actataacaacatatcgatcc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
11191618 |
actataacaacatatcgatcc |
11191598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 10084692 - 10084609
Alignment:
| Q |
130 |
tggtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacat |
213 |
Q |
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| T |
10084692 |
tggtaccagatgaccaacccgtgagtggtgacaatttttgtaaaataacataatcaaatggttggtcgatacctgtaacaacat |
10084609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 34374328 - 34374398
Alignment:
| Q |
151 |
tgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatcc |
221 |
Q |
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| T |
34374328 |
tgagtggtgtaaatttttgtaaagtaatataatcagatggttggtcgatatctgtagcaacacgtcgatcc |
34374398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 10494497 - 10494401
Alignment:
| Q |
125 |
aatcctggtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatcc |
221 |
Q |
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| T |
10494497 |
aatcatggtactagatgaccaatccgtgagtggtgtgaatttttgtaaagtaacataatcagatggttggtcgatacctatagcaacacgtcgatcc |
10494401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 32162488 - 32162577
Alignment:
| Q |
132 |
gtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatcc |
221 |
Q |
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|||||||||||||||||||||||| ||| ||||| |||||| |||||||||||||| |||||| |||| ||||||||||| ||||||| |
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| T |
32162488 |
gtactagatgaccaatccatgagtagtgggaatttctgtaaattaacataatcagatggttggttgatacctataacaacacgtcgatcc |
32162577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 10311454 - 10311534
Alignment:
| Q |
48 |
cgcttgtccttgtaacaccattaaacacttagactagatttgatatgtgtttggctaagcatgaaatttagatttacaatc |
128 |
Q |
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| T |
10311454 |
cgcttgtccttgtaacaccataaaacagttgggctggatttgatctgtgcctggctaagcatgtaatgaagatttacaatc |
10311534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 18251962 - 18251871
Alignment:
| Q |
130 |
tggtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggtcgataactataacaacatatcgatcc |
221 |
Q |
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| T |
18251962 |
tggtacgagatgaccaatccgtaagtggtgggaatttttgtaaagtaatataatcagatggttggttgatacctgtagcatcacatcgatcc |
18251871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 3064246 - 3064316
Alignment:
| Q |
125 |
aatcctggtactagatgaccaatccatgagtggtgacaatttttgtaaaataacataatcagattgttggt |
195 |
Q |
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|||| ||||||||| |||||||||| ||||| ||| |||||||||||| ||||||||||| || |||||| |
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| T |
3064246 |
aatcgtggtactaggtgaccaatccttgagttgtggaaatttttgtaaagtaacataatcaaatggttggt |
3064316 |
T |
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