View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17277_high_16 (Length: 569)
Name: NF17277_high_16
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_16 |
 | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Original strand, 24493951 - 24494500
Alignment:
| Q |
1 |
cattcaccagttggatgtaaacaatgcgttcttgcatggtaagctttcagaaactgtatacatgcaacaaccaccgggatttcatcatccagattaccct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24493951 |
cattcaccagttggatgtaaacaatgcgttcttgcatggtaagctttcagaaattgtatacatgcaacaaccaccgggatttcatcatccagattaccct |
24494050 |
T |
|
| Q |
101 |
aatcatgtttgtcggctaaagaaatctttgtatggcctaaaacaggcccctcgggcatggtttaacaccttacattctttcttactctcctatgggtttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24494051 |
aatcatgtttgtcggctaaagaaatctttgtatggcctaaaacaggcccctcgggcatggtttaacaccttacattctttcttactctcctatgggtttg |
24494150 |
T |
|
| Q |
201 |
tcaattccaaatctgatccatcattattcatctatctcaaaggtgatgtcaaactctacactttggtatatgttgatgatattttaattacaggcaacaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24494151 |
tcaattccaaatctgatccatcattattcatctatctcaaaggtgatgtcaaactctacactttggtatatgttgatgatattttaattactggcaacaa |
24494250 |
T |
|
| Q |
301 |
caaccatgcaattgctaagtgcatttcaacactaggcactatgttttccatcaaagacttaggttccattcacttctttcttggtgttgaagtcattcct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24494251 |
caaccatgcaattgctaagtgcatttcaacactaggcactatgttttccatcaaagacttaggttccattcacttctttcttggtgttgaagtcattcct |
24494350 |
T |
|
| Q |
401 |
actactcaaggattatttctgagtcaacataaatatattcatgatctacttgaccgcacaaagatgaaagatgcaaagattgtccattcaccgatgtcta |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24494351 |
actactcaaggattatttctgagtcaacataaatatattcatgatctacttgaccgcacaaagatgaaagatgcaaagattgtccattcaccgatgtcta |
24494450 |
T |
|
| Q |
501 |
catcctctcctcttactaaatctgatggcgcaagtgcagcagatagtacg |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24494451 |
catcctctcctcttactaaatctgatggcgcaagtgtagcagatagtacg |
24494500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Original strand, 93301 - 93850
Alignment:
| Q |
1 |
cattcaccagttggatgtaaacaatgcgttcttgcatggtaagctttcagaaactgtatacatgcaacaaccaccgggatttcatcatccagattaccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
93301 |
cattcaccagttggatgtaaacaatgtgttcttgcatggtaagctttcagaaactgtatacatgcaacaaccaccaggatttcatcatctagattaccct |
93400 |
T |
|
| Q |
101 |
aatcatgtttgtcggctaaagaaatctttgtatggcctaaaacaggcccctcgggcatggtttaacaccttacattctttcttactctcctatgggtttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
93401 |
aatcatgtttgtcggctaaagaaatctttgtatggcctaaaacaggcccctcgggcatggttcaacaccttacattctttcttactctcctatggatttg |
93500 |
T |
|
| Q |
201 |
tcaattccaaatctgatccatcattattcatctatctcaaaggtgatgtcaaactctacactttggtatatgttgatgatattttaattacaggcaacaa |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
93501 |
tcaattcaaaatctgatccatcattattcatctatctcaaaggtgatgtcaaactctacactttggtatatgttgatgatattttaattacaggcaacaa |
93600 |
T |
|
| Q |
301 |
caaccatgcaattgctaagtgcatttcaacactaggcactatgttttccatcaaagacttaggttccattcacttctttcttggtgttgaagtcattcct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
93601 |
caaccatgcaattgctaagtgcatttcaacactaggcactatgttttccatcaaagacttaggttccattcacttctttcttggtgttgaagtcattcct |
93700 |
T |
|
| Q |
401 |
actactcaaggattatttctgagtcaacataaatatattcatgatctacttgaccgcacaaagatgaaagatgcaaagattgtccattcaccgatgtcta |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
93701 |
actactcaaggattatttctgagtcaacataaatatattcatgatctacttgaccgcacaaagatgaaagatgcaaagattgtccattcaccgatgtcta |
93800 |
T |
|
| Q |
501 |
catcctctcctcttactaaatctgatggcgcaagtgcagcagatagtacg |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
93801 |
catcctctcctcttactaaatctgatggcgcaagtgaagcagatagtacg |
93850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University