View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17277_high_164 (Length: 227)
Name: NF17277_high_164
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_164 |
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| [»] scaffold0394 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 16841966 - 16842155
Alignment:
| Q |
20 |
caatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatgaaaatacagtcattcaccgtgatgattatcataaatc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
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|
| T |
16841966 |
caatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatgaaaatacagtcaatcaccgagatgattatcataaatc |
16842065 |
T |
|
| Q |
120 |
aattaacttggatgaatcacagttttaatgtaacttcttcgtcagagatagaccatactcgagactcaattcgtgaccatattctagagt |
209 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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|
| T |
16842066 |
aattaacttggatcagtcacagttttaatgtaacttcttcgtcagagatagaccatactcgagactcaatttgtgatcatattctagagt |
16842155 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 22481659 - 22481832
Alignment:
| Q |
18 |
ggcaatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatgaaaatacagtcattcaccgtgatgattatcataaa |
117 |
Q |
| |
|
|||||||||||||||||||| ||| | || | || || |||||||||||||| ||||| |||||||||||||||||||||||| ||||||| |||||| | |
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|
| T |
22481659 |
ggcaatacacaactttattagaaggagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcattcaccatgatgatgatcataga |
22481758 |
T |
|
| Q |
118 |
tcaattaacttggatgaat--cacagttttaatgtaacttcttcgtcagagatagaccatactcgagactcaat |
189 |
Q |
| |
|
|||| ||||||| || ||| || ||||| |||||| ||||||| |||||||| || ||| ||||| ||||||| |
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|
| T |
22481759 |
tcaactaacttgaattaatcccaaagtttcaatgtagcttcttcttcagagatggatcatgctcgaaactcaat |
22481832 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 5916884 - 5916711
Alignment:
| Q |
18 |
ggcaatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatgaaaatacagtcattcaccgtgatgattatcataaa |
117 |
Q |
| |
|
|||||||||||||||||||| ||| | || | || || |||||||||||||| ||||| |||||||||||||||||||||||| ||||||| |||||| | |
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|
| T |
5916884 |
ggcaatacacaactttattagaaggagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcattcaccatgatgatgatcataga |
5916785 |
T |
|
| Q |
118 |
tcaattaacttggatgaat--cacagttttaatgtaacttcttcgtcagagatagaccatactcgagactcaat |
189 |
Q |
| |
|
|||| ||||||| || ||| || |||||||||||| ||||||| |||||||| || ||| ||||| ||||||| |
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|
| T |
5916784 |
tcaactaacttgaatcaatcccaaagttttaatgtagcttcttcttcagagatggatcatgctcgaaactcaat |
5916711 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 36311741 - 36311914
Alignment:
| Q |
18 |
ggcaatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatgaaaatacagtcattcaccgtgatgattatcataaa |
117 |
Q |
| |
|
|||||||||||||||||||| ||| | || | || || |||||||||||||| ||||| |||||||||||||||||||||||| ||||||| |||||| | |
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|
| T |
36311741 |
ggcaatacacaactttattagaaggagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcattcaccatgatgatgatcataga |
36311840 |
T |
|
| Q |
118 |
tcaattaacttggatgaat--cacagttttaatgtaacttcttcgtcagagatagaccatactcgagactcaat |
189 |
Q |
| |
|
|||| ||||||| || ||| || |||||||||||| ||||||| |||||||| || ||| ||||| ||||||| |
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|
| T |
36311841 |
tcaactaacttgaatcaatcccaaagttttaatgtagcttcttcttcagagatggatcatgctcgaaactcaat |
36311914 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0394 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0394
Description:
Target: scaffold0394; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 6539 - 6365
Alignment:
| Q |
20 |
caatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatgaaaatacagtcattcaccgtgatgattatcataaatc |
119 |
Q |
| |
|
|||||||||||||||||| ||| | |||| || || |||||||||| ||| ||||| |||||||||||||| ||||||||| |||||||||||||| ||| |
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|
| T |
6539 |
caatacacaactttattagaaggagtgttgaaatggatgttgatttcaatctttatgaagatgaaaatacaatcattcaccatgatgattatcatagatc |
6440 |
T |
|
| Q |
120 |
aattaacttggatgaat--cacagttttaatgtaacttcttcgtcagagatagaccatactcgagactcaattcg |
192 |
Q |
| |
|
|| |||||||||| ||| || ||||| |||||| ||||||| ||| |||| || ||| ||||| |||||||||| |
|
|
| T |
6439 |
aactaacttggatcaatcccaaagtttcaatgtagcttcttcttcacagatggatcatgctcgaaactcaattcg |
6365 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 16565683 - 16565856
Alignment:
| Q |
18 |
ggcaatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatgaaaatacagtcattcaccgtgatgattatcataaa |
117 |
Q |
| |
|
|||||||||||||||||||| ||| | || | || || |||||||||||||| ||||| |||||||||||||||||||||||| ||||||| |||||| | |
|
|
| T |
16565683 |
ggcaatacacaactttattagaaggagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcattcaccatgatgatgatcataga |
16565782 |
T |
|
| Q |
118 |
tcaattaacttggatgaat--cacagttttaatgtaacttcttcgtcagagatagaccatactcgagactcaat |
189 |
Q |
| |
|
|||| ||||||| || ||| || ||||| |||||| ||||||| |||||||| || ||| ||||| ||||||| |
|
|
| T |
16565783 |
tcaactaacttgaatcaatcccaaagtttcaatgtagcttcttcttcagagatggatcatgctcgaaactcaat |
16565856 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 15618988 - 15619140
Alignment:
| Q |
18 |
ggcaatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatga-aaatacagtcattcaccgtgatgattatcataa |
116 |
Q |
| |
|
|||||||||||||||||| | ||| | || | || || |||||||||| ||| ||||| ||||| | | ||||| ||||||||| |||| ||||||||| |
|
|
| T |
15618988 |
ggcaatacacaactttatgagaaggattggtgaaatggatgttgatttcaatctttatgaagattagatatacaatcattcaccatgat-attatcatag |
15619086 |
T |
|
| Q |
117 |
atcaattaacttggatgaat--cacagttttaatgtaacttcttcgtcagagat |
168 |
Q |
| |
|
||||| |||||| ||| ||| || |||||||||||| ||||||| || ||||| |
|
|
| T |
15619087 |
atcaactaactttgatcaatcccaaagttttaatgtagcttcttcttcggagat |
15619140 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 16547600 - 16547773
Alignment:
| Q |
18 |
ggcaatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatgaaaatacagtcattcaccgtgatgattatcataaa |
117 |
Q |
| |
|
|||||||||||||||||||| ||| | || | || || |||||||||||||| ||||| |||||||||||||||||||||||| ||||||| |||||| | |
|
|
| T |
16547600 |
ggcaatacacaactttattagaaggagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcattcaccatgatgatgatcataga |
16547699 |
T |
|
| Q |
118 |
tcaattaacttggatgaat--cacagttttaatgtaacttcttcgtcagagatagaccatactcgagactcaat |
189 |
Q |
| |
|
|||| ||||||| || ||| || ||||| |||||| ||||||| |||||||| || ||| |||| ||||||| |
|
|
| T |
16547700 |
tcaactaacttgaatcaatcccaaagtttcaatgtagcttcttcttcagagatggatcatgttcgaaactcaat |
16547773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 17830706 - 17830533
Alignment:
| Q |
20 |
caatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatgaaaatacagtcattcaccgtgatgattatcataaatc |
119 |
Q |
| |
|
|||||||||||||||||| ||| | || | || || |||||||||| | | ||||| |||||||||||||| ||||||||| |||||||||||||| ||| |
|
|
| T |
17830706 |
caatacacaactttattagaaggagtgctgaaatggatgttgatttcagtctttatgaagatgaaaatacaatcattcaccatgatgattatcatagatc |
17830607 |
T |
|
| Q |
120 |
aattaacttggatgaat--cacagttttaatgtaacttcttcgtcagagatagaccatactcgagactcaattc |
191 |
Q |
| |
|
|| |||||||||| ||| || |||||||||||| ||||||| ||| |||| || ||| ||||| ||| ||||| |
|
|
| T |
17830606 |
aactaacttggatcaatcccaaagttttaatgtagcttcttcttcacagattgatcatgctcgaaacttaattc |
17830533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 35569846 - 35569673
Alignment:
| Q |
18 |
ggcaatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatgaaaatacagtcattcaccgtgatgattatcataaa |
117 |
Q |
| |
|
|||||||||||||||||||| || | || | || || |||||||||||||| ||||| |||||||||||||||||||||||| ||||||| |||||| | |
|
|
| T |
35569846 |
ggcaatacacaactttattagaaagagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcattcaccatgatgatgatcataga |
35569747 |
T |
|
| Q |
118 |
tcaattaacttggatgaat--cacagttttaatgtaacttcttcgtcagagatagaccatactcgagactcaat |
189 |
Q |
| |
|
|||| ||||||| || ||| || ||||| |||||| ||||||| |||||||| || ||| ||||| ||||||| |
|
|
| T |
35569746 |
tcaactaacttgaatcaatcccaaagtttcaatgtagcttcttcttcagagatggatcatgctcgaaactcaat |
35569673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 10372655 - 10372479
Alignment:
| Q |
18 |
ggcaatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatgaaaatacagtcattcaccgtgatgattatcataaa |
117 |
Q |
| |
|
|||||||||||||||||||| ||| | || | || || |||||||||| ||| ||||| || ||||||||||| ||||||||| |||||||||||||| | |
|
|
| T |
10372655 |
ggcaatacacaactttattagaaggagtgctgaaatggatgttgatttcaatctttatgaaaatgaaaatacaatcattcaccatgatgattatcataga |
10372556 |
T |
|
| Q |
118 |
tcaattaacttggatgaat--cacagttttaatgtaacttcttcgtcagagatagaccatactcgagactcaattcg |
192 |
Q |
| |
|
|||| |||||||||| ||| || ||||| |||||| ||||||| |||||| | || ||| ||||| |||||||||| |
|
|
| T |
10372555 |
tcaactaacttggatcaatcccaaagtttcaatgtaccttcttcttcagaggtggatcatgctcgaaactcaattcg |
10372479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 37638847 - 37639017
Alignment:
| Q |
18 |
ggcaatacacaactttattataagaaatgttaaattgcatgttgattttaatatttatcaagatgaaaatacagtcattcaccgtgatgattatcataaa |
117 |
Q |
| |
|
|||||||||||||||||||| ||| | || | || || |||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||| | |
|
|
| T |
37638847 |
ggcaatacacaactttattagaaggagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcattcac---aatgatgatcataga |
37638943 |
T |
|
| Q |
118 |
tcaattaacttggatgaat--cacagttttaatgtaacttcttcgtcagagatagaccatactcgagactcaat |
189 |
Q |
| |
|
|||| |||||||||| ||| || ||||| |||||| ||||||| |||||||| || ||| ||||| ||||||| |
|
|
| T |
37638944 |
tcaactaacttggatcaatcccaaagtttcaatgtagcttcttcttcagagatggatcatgctcgaaactcaat |
37639017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 185
Target Start/End: Complemental strand, 9553403 - 9553288
Alignment:
| Q |
71 |
tttatcaagatgaaaatacagtcattcaccgtgatgattatcataaatcaattaacttggat-gaatcacagttttaatgtaacttcttcgtcagagata |
169 |
Q |
| |
|
||||| ||||||||| |||| ||||||||| ||||||||||||| ||||| |||||| ||| || | ||||| |||||| |||||| ||| ||||| |
|
|
| T |
9553403 |
tttatgaagatgaaattacactcattcaccacgatgattatcatagatcaactaacttcgatccaacaagagtttcaatgtagcttctttgtcggagatg |
9553304 |
T |
|
| Q |
170 |
gaccatactcgagact |
185 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
9553303 |
gatcatactcgagact |
9553288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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