View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_171 (Length: 218)
Name: NF17277_high_171
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_171 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 9019237 - 9019020
Alignment:
| Q |
1 |
catgacttaggcacactacacaatatactcataaatgtgatgctatcatttaccgtgtcttgtgcattttttattttaacatctaataaacagttgccta |
100 |
Q |
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| T |
9019237 |
catgacttaggcacactacacaatatactcataaatgtgatgctatcatttaccgtgtcttgtgcattttttattttaacatctaataaacagttgccta |
9019138 |
T |
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| Q |
101 |
agtagaagaacgaggtgcagcaccctcactgccacttgagtcttgaggtcaaattcatatgtatagttgcaactaatcctttgttattcttgtgattctt |
200 |
Q |
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| T |
9019137 |
agtagaagaacgaggtgcagcaccctcactgccacttgagtcttgaggtcaaattcatatgtatagttgcaactaatccttttttaatcttgtgattctt |
9019038 |
T |
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| Q |
201 |
tttcatagcacttaattc |
218 |
Q |
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|||||||||||| ||||| |
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| T |
9019037 |
tttcatagcactcaattc |
9019020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 9028639 - 9028422
Alignment:
| Q |
1 |
catgacttaggcacactacacaatatactcataaatgtgatgctatcatttaccgtgtcttgtgcattttttattttaacatctaataaacagttgccta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9028639 |
catgacttaggcacactacacaatatactcataaatgtgatgctatcatttaccgtgtcttgtgcattttttattttaacatctaataaacagttgccta |
9028540 |
T |
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| Q |
101 |
agtagaagaacgaggtgcagcaccctcactgccacttgagtcttgaggtcaaattcatatgtatagttgcaactaatcctttgttattcttgtgattctt |
200 |
Q |
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| T |
9028539 |
agtagaagaacgaggtgcagcaccctcactgccacttgagtcttgaggtcaaattcatatgtatagttgcaactaatccttttttaatcttgtgattctt |
9028440 |
T |
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| Q |
201 |
tttcatagcacttaattc |
218 |
Q |
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| T |
9028439 |
tttcatagcactcaattc |
9028422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 89 - 218
Target Start/End: Complemental strand, 8993869 - 8993740
Alignment:
| Q |
89 |
aacagttgcctaagtagaagaacgaggtgcagcaccctcactgccacttgagtcttgaggtcaaattcatatgtatagttgcaactaatcctttgttatt |
188 |
Q |
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| T |
8993869 |
aacagttgcctaagtagaagaacgaggtggagcaccctcacttccatttgagtcttgaggtcaaattcatatgcatagttgcaactaatcctttgttaat |
8993770 |
T |
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| Q |
189 |
cttgtgattctttttcatagcacttaattc |
218 |
Q |
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| T |
8993769 |
attgtgattctttttcatagaactcaattc |
8993740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 9014616 - 9014492
Alignment:
| Q |
87 |
taaacagttgcctaagtagaagaacgaggtgcagcaccctcactgccacttgagtcttgaggtcaaattcatatgtatagttgcaactaatcctttgtta |
186 |
Q |
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| T |
9014616 |
taaacagttgcttaagtagaagaaataggtgcagcaccctcactgccacttgag-------gtcaaattcatatctatagttgcaactaatcctttgtta |
9014524 |
T |
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| Q |
187 |
ttcttgtgattctttttcatagcacttaattc |
218 |
Q |
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||||| |||||||||| ||||||||| ||||| |
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| T |
9014523 |
ttcttatgattcttttccatagcactcaattc |
9014492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 8993982 - 8993924
Alignment:
| Q |
1 |
catgacttaggcacactacacaatatactcataaatgtgatgctatcatttaccgtgtc |
59 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
8993982 |
catgacttaggcacactacacaatatactcataaatgtgacgctatcatttatcgtgtc |
8993924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 218
Target Start/End: Complemental strand, 9017971 - 9017941
Alignment:
| Q |
188 |
tcttgtgattctttttcatagcacttaattc |
218 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
9017971 |
tcttgtgattctttttcatagcacttaattc |
9017941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 9018126 - 9018094
Alignment:
| Q |
27 |
actcataaatgtgatgctatcatttaccgtgtc |
59 |
Q |
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| T |
9018126 |
actcataaatgtgatgctatcatttatcgtgtc |
9018094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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