View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_173 (Length: 217)
Name: NF17277_high_173
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_173 |
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Alignment Details
Target: chr6 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 20706268 - 20706213
Alignment:
| Q |
144 |
tagcaacttgattaccaggaggtacattcccagaaagggtattgttatgaacatcc |
199 |
Q |
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| T |
20706268 |
tagcaacttgattaccaggaggtacattcccagaaagggtattgttgtgaacatcc |
20706213 |
T |
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Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 20706397 - 20706341
Alignment:
| Q |
15 |
cacagacaagcgtaacagcgtctcgcacatttacgaatcaaaatgattgtttactca |
71 |
Q |
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| T |
20706397 |
cacagacaagcgtaacagcgtctcacacatttacggatcaaaatgattgtttactca |
20706341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 11476703 - 11476748
Alignment:
| Q |
26 |
gtaacagcgtctcgcacatttacgaatcaaaatgattgtttactca |
71 |
Q |
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| T |
11476703 |
gtaacagcgtctcacacatataagaatcaaaatgaatgtttactca |
11476748 |
T |
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