View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17277_high_174 (Length: 215)

Name: NF17277_high_174
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17277_high_174
NF17277_high_174
[»] chr7 (11 HSPs)
chr7 (1-201)||(13106640-13106840)
chr7 (7-87)||(22760886-22760967)
chr7 (1-100)||(21877825-21877925)
chr7 (27-90)||(18056744-18056807)
chr7 (27-100)||(41519069-41519142)
chr7 (66-97)||(23301564-23301595)
chr7 (28-97)||(11720922-11720991)
chr7 (27-100)||(19553497-19553570)
chr7 (1-77)||(26459392-26459469)
chr7 (27-100)||(48079687-48079760)
chr7 (10-61)||(42262093-42262145)
[»] chr6 (6 HSPs)
chr6 (7-100)||(6385885-6385979)
chr6 (30-105)||(24333979-24334054)
chr6 (27-100)||(34444847-34444920)
chr6 (25-95)||(7389002-7389072)
chr6 (27-97)||(11103397-11103467)
chr6 (32-97)||(8597709-8597774)
[»] chr4 (14 HSPs)
chr4 (4-100)||(51948500-51948597)
chr4 (27-100)||(51969061-51969134)
chr4 (27-100)||(46295141-46295214)
chr4 (27-97)||(32992656-32992726)
chr4 (27-97)||(37274421-37274491)
chr4 (27-100)||(53496921-53496994)
chr4 (1-104)||(38869785-38869889)
chr4 (29-100)||(20281151-20281222)
chr4 (27-97)||(1730451-1730521)
chr4 (1-78)||(37109332-37109410)
chr4 (7-60)||(43728418-43728472)
chr4 (27-97)||(49576856-49576926)
chr4 (33-97)||(4483263-4483327)
chr4 (28-100)||(35644121-35644193)
[»] chr3 (10 HSPs)
chr3 (7-97)||(4844473-4844564)
chr3 (7-97)||(4870169-4870260)
chr3 (27-97)||(10445101-10445171)
chr3 (7-97)||(51903840-51903931)
chr3 (7-100)||(17035011-17035103)
chr3 (1-68)||(14186665-14186732)
chr3 (27-78)||(53412989-53413040)
chr3 (7-100)||(11612322-11612416)
chr3 (28-100)||(15048020-15048092)
chr3 (27-95)||(19716241-19716309)
[»] chr8 (12 HSPs)
chr8 (1-90)||(2203509-2203599)
chr8 (27-97)||(43533681-43533751)
chr8 (7-90)||(23361618-23361702)
chr8 (7-97)||(30483846-30483937)
chr8 (7-100)||(968385-968479)
chr8 (27-97)||(6536564-6536634)
chr8 (27-97)||(28783104-28783174)
chr8 (27-60)||(26688909-26688942)
chr8 (27-100)||(35826355-35826428)
chr8 (5-60)||(28636342-28636398)
chr8 (5-60)||(28644076-28644132)
chr8 (5-60)||(28653028-28653084)
[»] chr2 (13 HSPs)
chr2 (1-100)||(42327354-42327454)
chr2 (27-105)||(26276399-26276477)
chr2 (1-50)||(34041597-34041647)
chr2 (27-97)||(37480119-37480189)
chr2 (27-97)||(42860392-42860462)
chr2 (27-100)||(33569817-33569890)
chr2 (28-100)||(12497741-12497813)
chr2 (7-90)||(19244132-19244216)
chr2 (18-97)||(25637185-25637265)
chr2 (1-100)||(28846708-28846808)
chr2 (27-97)||(12086091-12086161)
chr2 (19-100)||(14500312-14500394)
chr2 (27-76)||(33839243-33839292)
[»] chr1 (19 HSPs)
chr1 (7-90)||(51814517-51814601)
chr1 (1-50)||(15786329-15786379)
chr1 (18-99)||(41508865-41508947)
chr1 (27-100)||(10150828-10150901)
chr1 (27-100)||(15065009-15065082)
chr1 (27-100)||(39966137-39966210)
chr1 (27-100)||(43446007-43446080)
chr1 (1-95)||(8904431-8904526)
chr1 (27-97)||(1094569-1094639)
chr1 (1-78)||(8177163-8177241)
chr1 (1-78)||(9165176-9165254)
chr1 (8-97)||(12587294-12587383)
chr1 (27-97)||(21392881-21392951)
chr1 (7-104)||(27223085-27223183)
chr1 (1-47)||(32916815-32916860)
chr1 (27-104)||(4280406-4280483)
chr1 (1-97)||(33700735-33700832)
chr1 (36-97)||(48619171-48619232)
chr1 (19-78)||(2799897-2799957)
[»] chr5 (6 HSPs)
chr5 (18-90)||(29692355-29692428)
chr5 (7-53)||(14495811-14495858)
chr5 (27-90)||(16457854-16457917)
chr5 (7-97)||(19949578-19949668)
chr5 (18-97)||(84858-84938)
chr5 (7-54)||(21086737-21086785)
[»] scaffold0004 (1 HSPs)
scaffold0004 (27-100)||(81523-81596)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 13106840 - 13106640
Alignment:
Q  1 ctagtagtattgacttaggatctggggtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaa 100  Q
    ||||||||||||| || |||||||| |||| ||||||||||||||||||| |||  ||||| | | |||||||||||| || |||||||| ||| |||||    
T  13106840 ctagtagtattgatttgggatctggagtgtactcctcctcaaggtctcaggttcgattctctctgatgctaatttgagcgggctaatttagctttttaaa 13106741  T
Q  101 caaattttatagattctttaaacaatgtttttatgacactctttaacaaaacccttcttttaaaatagataaataccttctttgaagcttaacacccttt 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13106740 caaattttataggttctttaaacaatgtttttatgacactctttaacaaaaccattcttttaaaatagataaataccttctttgaagcttaacacccttt 13106641  T
Q  201 g 201  Q
    |    
T  13106640 g 13106640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 22760886 - 22760967
Alignment:
Q  7 gtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaat 87  Q
    |||||||||| ||| ||||| |||||||||||||||||||||||| |||  ||||| ||| ||| ||||||||||| |||||    
T  22760886 gtattgacttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctccccgatgccaatttgagtgggctaat 22760967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 21877825 - 21877925
Alignment:
Q  1 ctagtagtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaa 99  Q
    ||||| |||||||||| ||| ||||| | ||||||||||| |||||||||  |||  |||||  |||||| || |||||||| |||||||||||||||||    
T  21877825 ctagtggtattgacttgggacctgggagggtgctcctccttaaggtctcacgttcgattctccacggtgccaaattgagtgggctaatttaacttcttaa 21877924  T
Q  100 a 100  Q
    |    
T  21877925 a 21877925  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 18056807 - 18056744
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaattta 90  Q
    ||||||||||||| |||||||||| |||  ||||| |||||||||||||| |||| ||||||||    
T  18056807 gtgtgctcctcctgaaggtctcaggttcgattctccccggtgctaatttgggtgggctaattta 18056744  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 41519142 - 41519069
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaa 100  Q
    |||||||||| |||||||||||||||||  || || ||||||  |||||| |||| |||||||| |||||||||    
T  41519142 gtgtgctccttctcaaggtctcagattcgattatctccggtgtcaatttgggtgggctaatttagcttcttaaa 41519069  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 97
Target Start/End: Complemental strand, 23301595 - 23301564
Alignment:
Q  66 gtgctaatttgagtggactaatttaacttctt 97  Q
    ||||||||||||||||||||||||||||||||    
T  23301595 gtgctaatttgagtggactaatttaacttctt 23301564  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 11720991 - 11720922
Alignment:
Q  28 tgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    |||||||||||| ||||| ||||||||  ||||| || |||| |||||| |||| |||||||| ||||||    
T  11720991 tgtgctcctccttaaggtatcagattcgattctccccagtgccaatttgggtgggctaatttagcttctt 11720922  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 19553497 - 19553570
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaa 100  Q
    ||||||||||||||||||||| || |||| ||||| ||||| | |||||  |||| ||| |||| |||||||||    
T  19553497 gtgtgctcctcctcaaggtcttaggttcaattctccccggttccaatttaggtgggctactttagcttcttaaa 19553570  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 26459469 - 26459392
Alignment:
Q  1 ctagtagtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttga 77  Q
    ||||| |||||| ||| ||| ||||| |||||||||||||||||||||||| |||  ||||| | ||||| |||||||    
T  26459469 ctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaatttga 26459392  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 48079687 - 48079760
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaa 100  Q
    ||||| |||| ||| ||||||||| ||   ||||| ||||||||||||||||||| |||||||| ||| |||||    
T  48079687 gtgtggtcctgctcgaggtctcaggtttgattctctccggtgctaatttgagtgggctaatttagcttattaaa 48079760  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 42262145 - 42262093
Alignment:
Q  10 ttgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttctc 61  Q
    ||||||| ||||||| | ||||||||||||| ||||||||||||||| |||||    
T  42262145 ttgacttgggatctgagagtgtgctcctcctaaaggtctcagattcaattctc 42262093  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 6385885 - 6385979
Alignment:
Q  7 gtattgacttaggatctgggg-tgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaa 100  Q
    |||||||||| ||| |||||  |||||||||||| |||||||||| |||  ||||| |||||||||||||| |||| |||||||| |||||||||    
T  6385885 gtattgacttgggacctgggactgtgctcctccttaaggtctcaggttcgattctctccggtgctaatttgggtgggctaatttagcttcttaaa 6385979  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 24334054 - 24333979
Alignment:
Q  30 tgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaacaaat 105  Q
    ||||||||||||||||||||| |||| ||||| ||||||| |||||| |||| ||| |||| ||||||||| ||||    
T  24334054 tgctcctcctcaaggtctcaggttcaattctcaccggtgccaatttgggtgggctagtttagcttcttaaaaaaat 24333979  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 34444847 - 34444920
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaa 100  Q
    |||||||||||| ||||||||||| |||  ||||| | || |||| ||||||||| |||||||| |||||||||    
T  34444847 gtgtgctcctccccaaggtctcaggttcgattctccctggagctagtttgagtgggctaatttagcttcttaaa 34444920  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 7389072 - 7389002
Alignment:
Q  25 gggtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttc 95  Q
    ||||||| || | ||||||||||||| |||| ||||| ||||||  |||||||||||| ||||||| ||||    
T  7389072 gggtgtgttctttctcaaggtctcaggttcaattctccccggtgtcaatttgagtggattaatttagcttc 7389002  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 11103467 - 11103397
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    ||||||||||||| |||||||| |||||  ||||| | ||||| ||||| ||||  |||||||||||||||    
T  11103467 gtgtgctcctccttaaggtctccgattcgattctctctggtgccaatttaagtgagctaatttaacttctt 11103397  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 8597774 - 8597709
Alignment:
Q  32 ctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    ||||||||||||||||||  |||| ||||| || |||| |||||| |||| |||||||| ||||||    
T  8597774 ctcctcctcaaggtctcaagttcaattctctccagtgccaatttgggtgggctaatttagcttctt 8597709  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 51948500 - 51948597
Alignment:
Q  4 gtagtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaa 100  Q
    ||||||||||||| |||||| || |||||| ||||||| ||||||||| |||| ||||| || |||  ||||| | ||||||||||||||||||||||    
T  51948500 gtagtattgacttgggatctaggagtgtgcccctcctcgaggtctcaggttcaattctctccagtgtcaatttaaatggactaatttaacttcttaaa 51948597  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 51969061 - 51969134
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaa 100  Q
    ||||||||||||||||||| |||| |||| ||||| | ||||| ||||||  ||||||||||||||||||||||    
T  51969061 gtgtgctcctcctcaaggtttcaggttcatttctctctggtgccaatttggatggactaatttaacttcttaaa 51969134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 46295141 - 46295214
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaa 100  Q
    |||||||||||||||||||||||| |||  ||||| ||||||| |||||| |||| ||| |||| |||||||||    
T  46295141 gtgtgctcctcctcaaggtctcaggttcgattctccccggtgccaatttgggtgggctagtttagcttcttaaa 46295214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 32992656 - 32992726
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    |||||||||||||||||||||||  |||  ||||| ||||||  ||||||||||||||| |||| ||||||    
T  32992656 gtgtgctcctcctcaaggtctcaagttcgattctccccggtgtcaatttgagtggactagtttagcttctt 32992726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 37274491 - 37274421
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    ||||||||||||||||||||| || |||  ||||| | ||||||||||| ||||| |||||||| ||||||    
T  37274491 gtgtgctcctcctcaaggtcttaggttcgattctctctggtgctaatttaagtgggctaatttagcttctt 37274421  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 53496921 - 53496994
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaa 100  Q
    |||||||||||||||| ||||||||||   ||||| | || || ||||||  ||||||||||||||||||||||    
T  53496921 gtgtgctcctcctcaaagtctcagatttgattctctctggagccaatttggttggactaatttaacttcttaaa 53496994  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 38869785 - 38869889
Alignment:
Q  1 ctagtagtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaa 99  Q
    ||||| |||||| ||| ||||||||| |||||||||||||||||||||||| |||  ||| | | ||||| |||||||| ||  || |||| |||||| |    
T  38869785 ctagtggtattggcttgggatctgggagtgtgctcctcctcaaggtctcaggttcgattccctctggtgccaatttgagggggttagtttagcttcttca 38869884  T
Q  100 acaaa 104  Q
    |||||    
T  38869885 acaaa 38869889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 20281222 - 20281151
Alignment:
Q  29 gtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaa 100  Q
    |||||||||||||||||| ||| |||  | ||| ||||||| | ||||||||||||||||||  ||||||||    
T  20281222 gtgctcctcctcaaggtcccaggttcgatcctccccggtgccagtttgagtggactaatttagattcttaaa 20281151  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 1730521 - 1730451
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    ||||||||||| |||| |||||||||||  ||||| | |||||||||||||| ||| || |||| ||||||    
T  1730521 gtgtgctcctcttcaaagtctcagattctattctctctggtgctaatttgaggggattagtttagcttctt 1730451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 37109410 - 37109332
Alignment:
Q  1 ctagtagtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgag 78  Q
    ||||| |||||| ||| ||| ||||| |||||||||||||||||||||||| |||  ||||| | ||||| ||||||||    
T  37109410 ctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaatttgag 37109332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 43728418 - 43728472
Alignment:
Q  7 gtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttct 60  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||| |||| ||||    
T  43728418 gtattgacttatgatctgggagtgtgctcctcctcaaagtctcaggttcaattct 43728472  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 49576926 - 49576856
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    |||||||||||||||||||||||| |||  ||||| ||  ||  |||||| ||||||||| ||||||||||    
T  49576926 gtgtgctcctcctcaaggtctcaggttcgattctctccaatgtcaatttgggtggactaacttaacttctt 49576856  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 4483327 - 4483263
Alignment:
Q  33 tcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    |||||||||||||||||| |||| ||||  |||||||   ||||||||||| |||||| ||||||    
T  4483327 tcctcctcaaggtctcaggttcaattctttccggtgcctgtttgagtggacaaatttagcttctt 4483263  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 35644193 - 35644121
Alignment:
Q  28 tgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaa 100  Q
    ||||||||||||||| ||||||| |||  |||||   |||||||||||| |||| |||||||| |||| ||||    
T  35644193 tgtgctcctcctcaacgtctcaggttcgattctccatggtgctaatttgggtggcctaatttagcttcataaa 35644121  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 4844564 - 4844473
Alignment:
Q  7 gtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    |||||||||| ||||||||| |||||||||||||| |||||||||  ||  ||||| ||||||| |||||| |||| |||||||| ||||||    
T  4844564 gtattgacttgggatctgggagtgtgctcctcctcgaggtctcaggatcgattctctccggtgccaatttgtgtgggctaatttagcttctt 4844473  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 4870260 - 4870169
Alignment:
Q  7 gtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    |||||||||| ||||||||| |||||||||||||| |||||||||  ||  ||||| ||||||| |||||| |||| |||||||| ||||||    
T  4870260 gtattgacttgggatctgggagtgtgctcctcctcgaggtctcaggatcgattctctccggtgccaatttgtgtgggctaatttagcttctt 4870169  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 10445171 - 10445101
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    |||||||||||||| ||||||||| |||  ||||| | ||||||||||||||||| |||||||| ||||||    
T  10445171 gtgtgctcctcctcgaggtctcaggttcgattctctctggtgctaatttgagtgggctaatttagcttctt 10445101  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 51903931 - 51903840
Alignment:
Q  7 gtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    |||||| ||| ||||||||| ||||||||||||||  |||||||| |||  ||||| ||||||  ||||||||||| |||||||| ||||||    
T  51903931 gtattggcttgggatctgggagtgtgctcctcctcgtggtctcaggttcgattctctccggtgtcaatttgagtgggctaatttagcttctt 51903840  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 17035011 - 17035103
Alignment:
Q  7 gtattgacttaggatctggggtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaa 100  Q
    |||||||||| ||||||| |  |||||| ||||||||||||||| |||  |||||  ||||   |||||| |||||||||||||||||||||||    
T  17035011 gtattgacttgggatctgaga-gtgctcatcctcaaggtctcaggttcgattctcctcggtatcaatttgggtggactaatttaacttcttaaa 17035103  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 14186665 - 14186732
Alignment:
Q  1 ctagtagtattgacttaggatctggggtgtgctcctcctcaaggtctcagattcagttctcgccggtg 68  Q
    ||||| |||||| ||| ||| |||| |||||||||||||||||||||||| |||  ||||| ||||||    
T  14186665 ctagtggtattgtcttgggacctggagtgtgctcctcctcaaggtctcaggttcgattctctccggtg 14186732  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 53412989 - 53413040
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgag 78  Q
    |||||||||||||||||||||||| |||| ||||| | ||||| ||||||||    
T  53412989 gtgtgctcctcctcaaggtctcaggttcaattctctctggtgccaatttgag 53413040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 11612322 - 11612416
Alignment:
Q  7 gtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaa 100  Q
    ||||| |||| ||| ||||| ||||||||||||| |||||||||| |||  | ||| ||||||| |||||  || |||||||||| |||||||||    
T  11612322 gtattcacttgggagctgggagtgtgctcctccttaaggtctcaggttcgatgctccccggtgccaatttaggtcgactaatttagcttcttaaa 11612416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 15048092 - 15048020
Alignment:
Q  28 tgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaa 100  Q
    ||||||||||||||||||||||| |||  || || | ||||| |||||||| ||  || ||||||||||||||    
T  15048092 tgtgctcctcctcaaggtctcaggttcgattatctctggtgccaatttgagggggttagtttaacttcttaaa 15048020  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 19716241 - 19716309
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttc 95  Q
    |||||||||||||||||||||| | |||  ||||| ||||||  |||||| |||| |||||||| ||||    
T  19716241 gtgtgctcctcctcaaggtctctggttcgattctccccggtgacaatttgggtgggctaatttagcttc 19716309  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 2203509 - 2203599
Alignment:
Q  1 ctagtagtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaattta 90  Q
    ||||| |||||| ||| ||| ||||| ||||||||||||||||||||||||  ||| ||||| ||||||| |||||| |||| ||||||||    
T  2203509 ctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcagggtcaattctccccggtgccaatttgggtgggctaattta 2203599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 43533751 - 43533681
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    |||||||  ||||||||||||||  |||| ||||| |||| ||||||||| |||||||||||||| |||||    
T  43533751 gtgtgcttatcctcaaggtctcacgttcaattctccccggcgctaatttgggtggactaatttaatttctt 43533681  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 23361702 - 23361618
Alignment:
Q  7 gtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaattta 90  Q
    |||||||||| |||| |||| |||||||||||||||||||||||| |||| ||||| | ||||  |||||  |||| ||||||||    
T  23361702 gtattgacttgggatatgggagtgtgctcctcctcaaggtctcaggttcaattctctctggtgtcaatttaggtgggctaattta 23361618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 30483937 - 30483846
Alignment:
Q  7 gtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    |||||| ||| |||| |||| |||||||||||||||  ||||||| |||| ||||| |  |||| ||||||| |||||||||||| ||||||    
T  30483937 gtattggcttgggatatgggagtgtgctcctcctcagagtctcaggttcaattctctcttgtgccaatttgaatggactaatttatcttctt 30483846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 968385 - 968479
Alignment:
Q  7 gtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaa 100  Q
    |||||| ||| ||| ||||| |||||||||||||| ||||||||| |||  ||||| ||| ||| |||||  |||| |||||||| |||||||||    
T  968385 gtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctccgatgccaatttaggtgggctaatttagcttcttaaa 968479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 6536564 - 6536634
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    |||||||||||||||||||||||| |||| ||||| | ||||| |||||  ||||  ||||||| ||||||    
T  6536564 gtgtgctcctcctcaaggtctcaggttcaattctctctggtgccaatttaggtgggttaatttagcttctt 6536634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 28783104 - 28783174
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    |||||||||||||||||||||||  |||  |||||  |||||| |||||| |||| |||||||| ||||||    
T  28783104 gtgtgctcctcctcaaggtctcatgttcgattctcctcggtgccaatttgggtgggctaatttagcttctt 28783174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 26688909 - 26688942
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttct 60  Q
    |||||||||||||||||||||||| |||||||||    
T  26688909 gtgtgctcctcctcaaggtctcaggttcagttct 26688942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 35826355 - 35826428
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaa 100  Q
    ||||||||||||| || || || |||||  ||||| ||||||  |||||  |||||||||||||||||||||||    
T  35826355 gtgtgctcctccttaaagtttcggattcgattctcaccggtgtcaatttaggtggactaatttaacttcttaaa 35826428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 28636398 - 28636342
Alignment:
Q  5 tagtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttct 60  Q
    |||||||||||| ||||||||| |||| ||| |||||||| ||||||||||| ||||    
T  28636398 tagtattgacttgggatctgggagtgtactcttcctcaagatctcagattcaattct 28636342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 28644132 - 28644076
Alignment:
Q  5 tagtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttct 60  Q
    |||||||||||| ||||||||| |||| ||| |||||||| ||||||||||| ||||    
T  28644132 tagtattgacttgggatctgggagtgtactcttcctcaagatctcagattcaattct 28644076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 28653084 - 28653028
Alignment:
Q  5 tagtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttct 60  Q
    |||||||||||| ||||||||| |||| ||| |||||||| ||||||||||| ||||    
T  28653084 tagtattgacttgggatctgggagtgtactcttcctcaagatctcagattcaattct 28653028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 42327454 - 42327354
Alignment:
Q  1 ctagtagtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaa 99  Q
    ||||| |||||| ||| ||| ||||| |||||||||||||||||||||||| |||  |||||  |||||| |||||| |||| |||||||| | ||||||    
T  42327454 ctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctcttcggtgccaatttgggtgggctaatttagcatcttaa 42327355  T
Q  100 a 100  Q
    |    
T  42327354 a 42327354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 26276399 - 26276477
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaacaaat 105  Q
    |||||||||||||||||||||||| |||  |||||| |||||  |||||  ||||||| ||||| ||||||||| ||||    
T  26276399 gtgtgctcctcctcaaggtctcaggttcgtttctcgtcggtgtcaatttaggtggactgatttagcttcttaaaaaaat 26276477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 34041647 - 34041597
Alignment:
Q  1 ctagtagtattgacttaggatctggg-gtgtgctcctcctcaaggtctcag 50  Q
    ||||| |||||||||||||||||| | ||||||||||||||||||||||||    
T  34041647 ctagtggtattgacttaggatctgagagtgtgctcctcctcaaggtctcag 34041597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 37480119 - 37480189
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    |||||||||||||||||||||||| |||  ||||| ||||| | |||||| |||| |||||||| ||||||    
T  37480119 gtgtgctcctcctcaaggtctcaggttcgattctccccggtcccaatttgggtgggctaatttagcttctt 37480189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 42860392 - 42860462
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    |||||||||||||| ||||||||  |||  ||| || |||||||| ||||||||| |||||||||||||||    
T  42860392 gtgtgctcctcctcgaggtctcaagttcgattcccgtcggtgctagtttgagtgggctaatttaacttctt 42860462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 33569890 - 33569817
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaa 100  Q
    |||||||| ||||| ||||||||| |||  ||||| | ||||||||||| |||||||||||||  |||||||||    
T  33569890 gtgtgctcttcctcgaggtctcaggttcgattctctctggtgctaatttaagtggactaattttgcttcttaaa 33569817  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 12497813 - 12497741
Alignment:
Q  28 tgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaa 100  Q
    |||||||||||||||||||||||||||  ||||| |  || ||| |||| ||||| ||||||| |||||||||    
T  12497813 tgtgctcctcctcaaggtctcagattcgattctctctagtactattttgggtggattaatttagcttcttaaa 12497741  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 19244132 - 19244216
Alignment:
Q  7 gtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaattta 90  Q
    |||||||||| ||| ||| | |||||||||||| ||||||||||| |||  ||||| | ||||| ||||||||||| ||||||||    
T  19244132 gtattgacttgggacctgagagtgtgctcctccccaaggtctcaggttcgattctctctggtgccaatttgagtgggctaattta 19244216  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 25637185 - 25637265
Alignment:
Q  18 ggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    ||||||||| |||||||||| ||| ||||||||| ||| |||||| ||| ||| |||||  |||| |||||||||||||||    
T  25637185 ggatctgggagtgtgctccttctcgaggtctcaggttcggttctctccgatgccaatttaggtgggctaatttaacttctt 25637265  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 28846708 - 28846808
Alignment:
Q  1 ctagtagtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaa 99  Q
    ||||| |||||||||| ||| ||||| |||||||||||||| | ||||||| |||  || || ||| ||  |||||| || |||||||||||||||||||    
T  28846708 ctagtggtattgacttgggacctgggagtgtgctcctcctcgatgtctcaggttcgattatcaccgatgtcaatttgggtagactaatttaacttcttaa 28846807  T
Q  100 a 100  Q
    |    
T  28846808 a 28846808  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 12086161 - 12086091
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    |||||||||||||||||||||| | |||  ||| | |||||||||||||  |||| |||||||| ||||||    
T  12086161 gtgtgctcctcctcaaggtctcgggttcgattccctccggtgctaatttaggtgggctaatttagcttctt 12086091  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 14500312 - 14500394
Alignment:
Q  19 gatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaa 100  Q
    |||||||| |||||||||||||| |||||||||||||  ||||| | ||||| |||||||| ||  || |||| |||||||||    
T  14500312 gatctgggagtgtgctcctcctctaggtctcagattcgattctctctggtgccaatttgagggggatagtttagcttcttaaa 14500394  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 33839292 - 33839243
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttg 76  Q
    |||||||||||||||||||||||| |||| ||||  | ||||||||||||    
T  33839292 gtgtgctcctcctcaaggtctcaggttcaattctttctggtgctaatttg 33839243  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 51814517 - 51814601
Alignment:
Q  7 gtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaattta 90  Q
    ||||||||||  |||||| | |||||||||||||||||||||||| |||  ||||| ||||||| |||||| |||| ||||||||    
T  51814517 gtattgacttgagatctgagagtgtgctcctcctcaaggtctcaggttcgattctctccggtgccaatttgggtgggctaattta 51814601  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 15786379 - 15786329
Alignment:
Q  1 ctagtagtattgacttaggatctggg-gtgtgctcctcctcaaggtctcag 50  Q
    |||||||||||| ||| ||||||||| ||||||||||||||||||||||||    
T  15786379 ctagtagtattggcttgggatctgggagtgtgctcctcctcaaggtctcag 15786329  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 41508865 - 41508947
Alignment:
Q  18 ggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaa 99  Q
    ||||||||| ||||||||||||||||||||||||||| | |||   ||||||  || |||||||| |||||||| ||||||||    
T  41508865 ggatctgggagtgtgctcctcctcaaggtctcagatttaattccatccggtgtcaacttgagtgggctaatttagcttcttaa 41508947  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 10150901 - 10150828
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaa 100  Q
    |||| ||||||||||| ||||||| |||| ||||| | ||||  | |||||||||||||||||| |||||||||    
T  10150901 gtgtactcctcctcaaagtctcaggttcaattctctcaggtgtcagtttgagtggactaatttagcttcttaaa 10150828  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 15065009 - 15065082
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaa 100  Q
    |||||||| ||||||||||||||| |||| || || ||||||  |||||| |||| |||||||| |||||||||    
T  15065009 gtgtgctcatcctcaaggtctcaggttcaattttccccggtgtcaatttgggtgggctaatttagcttcttaaa 15065082  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 39966137 - 39966210
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaa 100  Q
    |||| ||||||||||||||||||| |||  ||||| |||||||||||||| |||  ||| |||| |||||||||    
T  39966137 gtgtactcctcctcaaggtctcaggttcgtttctccccggtgctaatttgggtgtgctagtttagcttcttaaa 39966210  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 43446007 - 43446080
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaa 100  Q
    |||||||||||||||||||||||  |||  ||||| ||||||| ||||||||||| ||| |||| ||| |||||    
T  43446007 gtgtgctcctcctcaaggtctcatgttcgattctccccggtgccaatttgagtgggctagtttagctttttaaa 43446080  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 8904431 - 8904526
Alignment:
Q  1 ctagtagtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttc 95  Q
    |||||||||||||||| |||| || | |||||||||||||||||||||||  |||  ||||| | ||||| |||||||| ||  || |||||||||    
T  8904431 ctagtagtattgacttgggatatgtgagtgtgctcctcctcaaggtctcaagttcgattctctctggtgccaatttgagggggttagtttaacttc 8904526  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 1094569 - 1094639
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    |||||||||||| | |||||||| ||||  ||||| ||||||| |||||  |||| |||||||||||||||    
T  1094569 gtgtgctcctccacgaggtctcaaattcgattctctccggtgccaatttaggtgggctaatttaacttctt 1094639  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 8177241 - 8177163
Alignment:
Q  1 ctagtagtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgag 78  Q
    ||||| |||||| ||| ||||||||| ||||||||||||||||||| |||| |||  ||||| | ||||| ||||||||    
T  8177241 ctagtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggttcgattctctctggtgccaatttgag 8177163  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 9165254 - 9165176
Alignment:
Q  1 ctagtagtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgag 78  Q
    ||||| |||||| ||| ||| ||||| |||||||||||||||| ||||||| |||| ||||| | ||||| ||||||||    
T  9165254 ctagtggtattggcttgggacctgggagtgtgctcctcctcaaagtctcaggttcaattctctctggtgccaatttgag 9165176  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 12587294 - 12587383
Alignment:
Q  8 tattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    ||||||||| ||||||| | |||||||||||||| ||||||||| |||  ||||| ||||||| |||||  |||| |||||||| ||||||    
T  12587294 tattgacttgggatctgtgagtgtgctcctcctcgaggtctcaggttcgattctctccggtgc-aatttaggtgggctaatttagcttctt 12587383  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 97
Target Start/End: Original strand, 21392881 - 21392951
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    |||||||||||||||||||||||| |||  | |||  | |||| | ||||||||| |||||||||||||||    
T  21392881 gtgtgctcctcctcaaggtctcaggttcgatcctcctctgtgccagtttgagtgggctaatttaacttctt 21392951  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 104
Target Start/End: Complemental strand, 27223183 - 27223085
Alignment:
Q  7 gtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaacaaa 104  Q
    |||||||||||||||||||| |||||||| || |||||||||||| |||  ||||| ||  | ||||||| |||||  |||||||  ||||| ||||||    
T  27223183 gtattgacttaggatctgggagtgtgctcttcttcaaggtctcaggttcgattctccccaatactaatttaagtgggttaatttagtttcttcaacaaa 27223085  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 32916860 - 32916815
Alignment:
Q  1 ctagtagtattgacttaggatctggggtgtgctcctcctcaaggtct 47  Q
    |||||||||||||||| |||| ||| |||||||||||||||||||||    
T  32916860 ctagtagtattgactttggat-tggagtgtgctcctcctcaaggtct 32916815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 104
Target Start/End: Complemental strand, 4280483 - 4280406
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaacaaa 104  Q
    ||||||| ||||| |||||||||| ||   |||||  ||||||||||||| |||  ||||||||||||||| ||||||    
T  4280483 gtgtgcttctcctgaaggtctcaggtttgattctcttcggtgctaatttgggtgagctaatttaacttcttcaacaaa 4280406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 33700832 - 33700735
Alignment:
Q  1 ctagtagtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    ||||| |||||| ||| | ||||||| |||||||||||||||||||||||| |||  ||||| | ||||| ||||| || ||  || |||||||||||    
T  33700832 ctagtggtattggcttggaatctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaatttaagggggttagtttaacttctt 33700735  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 48619232 - 48619171
Alignment:
Q  36 tcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    |||||||| |||||| |||  || || ||||||  |||||||||||||||||||||||||||    
T  48619232 tcctcaagatctcaggttctattatctccggtgtcaatttgagtggactaatttaacttctt 48619171  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 2799897 - 2799957
Alignment:
Q  19 gatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgag 78  Q
    |||||||| |||||||||||||||||||||||| |||  ||||| | ||||| ||||||||    
T  2799897 gatctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaatttgag 2799957  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 29692428 - 29692355
Alignment:
Q  18 ggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaattta 90  Q
    ||||||||| |||||||||||||||| ||||||| || | ||||| ||| ||| |||||| |||||||||||||    
T  29692428 ggatctgggagtgtgctcctcctcaaagtctcaggtttaattctctccgatgccaatttgggtggactaattta 29692355  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 14495858 - 14495811
Alignment:
Q  7 gtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagatt 53  Q
    |||||||||| ||||||||| |||||||||||||| ||||||||||||    
T  14495858 gtattgacttgggatctgggagtgtgctcctcctcgaggtctcagatt 14495811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 16457854 - 16457917
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaattta 90  Q
    |||||||||||||||||||||||  |||| ||||| ||||||| |||||| |||| ||| ||||    
T  16457854 gtgtgctcctcctcaaggtctcatgttcaattctccccggtgccaatttgcgtgggctagttta 16457917  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 19949668 - 19949578
Alignment:
Q  7 gtattgacttaggatctggggtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    ||||||||||  ||||| | |||||||||||||| || |||||| |||| || || ||||||  ||||||  | |||||||||||||||||    
T  19949668 gtattgacttgagatctagagtgtgctcctcctcgagctctcaggttcaattttcaccggtgtcaatttggatagactaatttaacttctt 19949578  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 84858 - 84938
Alignment:
Q  18 ggatctggg-gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttctt 97  Q
    ||||||||| |||||||||||||||||||||||  |||  ||||| ||||||| | | || |||| |||||||| ||||||    
T  84858 ggatctgggagtgtgctcctcctcaaggtctcaagttcgattctccccggtgccattatgggtgggctaatttagcttctt 84938  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 21086737 - 21086785
Alignment:
Q  7 gtattgacttaggatctggg-gtgtgctcctcctcaaggtctcagattc 54  Q
    ||||||| |||||||||||  ||||||||||||||||| ||||||||||    
T  21086737 gtattgatttaggatctggcagtgtgctcctcctcaagatctcagattc 21086785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 81596 - 81523
Alignment:
Q  27 gtgtgctcctcctcaaggtctcagattcagttctcgccggtgctaatttgagtggactaatttaacttcttaaa 100  Q
    ||||||||||||||||||||||||||||  ||||| | | ||| |||||||| |   || ||||||||||||||    
T  81596 gtgtgctcctcctcaaggtctcagattcgattctccctgatgccaatttgagggagttagtttaacttcttaaa 81523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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