View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_178 (Length: 208)
Name: NF17277_high_178
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_178 |
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Alignment Details
Target: chr1 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 10550112 - 10550282
Alignment:
| Q |
18 |
gaagctatagagaaagtaaagaaatagacagtagagcgtagcatcattaggaaactcctccactttatatcatatatttcaaaggaannnnnnnnaaact |
117 |
Q |
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| T |
10550112 |
gaagctatagagaaagtaa-gaaatagacagtagagcgtagcatcattaggaaactcc---actttatatcatatatttcaaaggaattttttttaaact |
10550207 |
T |
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| Q |
118 |
ccaaaactttattatggagagtaaggactattaacaaatcaccaataaattattcactctaacaaatatagaaaa |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
10550208 |
ccaaaactttattatggagagtaaggactattaacaaatcaccaagaaattattcactctaacaaatgtagaaaa |
10550282 |
T |
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