View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_181 (Length: 205)
Name: NF17277_high_181
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_181 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 22 - 196
Target Start/End: Original strand, 6139816 - 6139991
Alignment:
| Q |
22 |
agaggtaattaaattttcactcaaattatatacattttcttacat-aatcactttaatactttttctgatattattacacacattttaaacacacatatg |
120 |
Q |
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| T |
6139816 |
agaggtaattaaattttcactcaaattatatacattttcttacattaatcactttaatactttttctgatattattacacatattttaaacacacatatg |
6139915 |
T |
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| Q |
121 |
tctctttcattgatttatagtctttactggttgacaacgaagagaatattctttactacagaaaattcatctcact |
196 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
6139916 |
tctctttcattgatttatagtctttactggttggcaaggaagagaatattctttactacagaaaattcatatcact |
6139991 |
T |
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