View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17277_high_2 (Length: 897)

Name: NF17277_high_2
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17277_high_2
NF17277_high_2
[»] chr3 (5 HSPs)
chr3 (203-879)||(5158170-5158846)
chr3 (42-112)||(48095482-48095552)
chr3 (708-846)||(13425364-13425500)
chr3 (42-112)||(52970236-52970306)
chr3 (725-774)||(52970881-52970930)
[»] chr7 (9 HSPs)
chr7 (451-796)||(25010640-25010984)
chr7 (42-112)||(15892790-15892860)
chr7 (571-758)||(8109518-8109705)
chr7 (42-112)||(19219416-19219486)
chr7 (680-754)||(42573477-42573551)
chr7 (243-353)||(42573882-42573992)
chr7 (43-112)||(25009835-25009904)
chr7 (42-112)||(41255224-41255294)
chr7 (725-774)||(19217281-19217330)
[»] chr5 (7 HSPs)
chr5 (491-788)||(11633172-11633465)
chr5 (564-783)||(31044051-31044269)
chr5 (617-774)||(31048759-31048915)
chr5 (42-112)||(16491980-16492050)
chr5 (564-774)||(31059395-31059604)
chr5 (42-112)||(34830527-34830597)
chr5 (42-112)||(25762523-25762593)
[»] chr1 (9 HSPs)
chr1 (666-774)||(5960094-5960202)
chr1 (465-849)||(25369702-25370087)
chr1 (802-869)||(10549309-10549376)
chr1 (68-158)||(13257193-13257283)
chr1 (42-112)||(33804120-33804190)
chr1 (87-164)||(25369386-25369463)
chr1 (498-774)||(10549420-10549693)
chr1 (42-112)||(44710863-44710933)
chr1 (725-774)||(33803473-33803522)
[»] chr2 (7 HSPs)
chr2 (661-774)||(21198953-21199066)
chr2 (642-808)||(26264492-26264657)
chr2 (617-768)||(16041148-16041299)
chr2 (42-112)||(30214283-30214353)
chr2 (42-112)||(17310267-17310337)
chr2 (725-774)||(17310938-17310987)
chr2 (725-774)||(29810058-29810107)
[»] chr8 (4 HSPs)
chr8 (42-112)||(756749-756819)
chr8 (703-774)||(755795-755866)
chr8 (42-88)||(23255566-23255612)
chr8 (123-172)||(12846924-12846973)


Alignment Details
Target: chr3 (Bit Score: 607; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 203 - 879
Target Start/End: Original strand, 5158170 - 5158846
Alignment:
Q  203 ttggattatactttccgaacacttagtgcacattttggaaaatataattcgaacaaccccattaactatacatccatgaaatggaagtacgtctgcatgg 302  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5158170 ttggattatactttccgaacacttattgcacattttggaaaatataattcgaacaaccccattaactatacatccatgaaatggaagtacgtctgcatgg 5158269  T
Q  303 ggcgtgggaccgcacttttcagattatataaaccaaaacatttatatgttgctcgacttattaatctaaagtgcatcagtagtactggaacataatgcnn 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  5158270 ggcgtgggaccgcacttttcagattatataaaccaaaacatttatatgttgctcgacttattaatctaaagtgcatcagtagtactggaacataatgcaa 5158369  T
Q  403 nnnnnttgacatttaaccatgcagagtttaaactgccagacctaaagaaaatctcattttggtagaagagataaatctttcttgctatccttaggatcac 502  Q
         ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5158370 aaaaattgacatttaaccatgcagagtttaaactaccagacctaaagaaaatctcattttggtagaagagataaatctttcttgctatccttaggatcac 5158469  T
Q  503 cttcatattcgaacaacaatctcttccggtgagtgtgaatttcatccaaacggannnnnnntgttgttcttgatcttcttggcaatcgcacatgcacaca 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  5158470 cttcatattcgaacaacaatctcttccggtgagtgtgaatttcatccaaacgga-ggggggtgttgttcttgatcttcttggcaatcgcacatgcacaca 5158568  T
Q  603 acaatccgtaagttatgaaaatgaaacaaccacactaaaatttatccgaaccagacctaattcctcgatcaacctcgtctgcgagaaaatgcatagcgtt 702  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5158569 acaatccgtaagttatgaaaatgaaacaaccacactaaaatttatccgaaccagacctaattcctcgatcaacctcgtctgcgagaaaatgcatagcgtt 5158668  T
Q  703 ccttgatatgcttctaataaacttagaacacaacata-tttcctttgaacctatgtttaagcatgataatgctattctagaacaatgcgtgtatccaagt 801  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5158669 ccttgatatgcttctaataaacttagaacacaacatattttcctttgaacctatgtttaagcatgatcatgctattctagaacaatgcgtgtatccaagt 5158768  T
Q  802 atgttgtggacggattttcagtttgtaattacatcactcatactactagttagataccttttcaaccgattgtgcaca 879  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5158769 atgttgtggacggattttcagtttgtaattacatcactcatactactagttagataccttttcaaccgatagtgcaca 5158846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 48095552 - 48095482
Alignment:
Q  42 ggacacatagaggtggtctctggtataacaaattgccgaaattgttctttaatatgtaccttcatgttgta 112  Q
    |||| |||||||||||||||||||| |||||||||||  |||||||| || | ||| | ||||||||||||    
T  48095552 ggacgcatagaggtggtctctggtaaaacaaattgcccgaattgttccttcaaatgcaacttcatgttgta 48095482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 708 - 846
Target Start/End: Original strand, 13425364 - 13425500
Alignment:
Q  708 atatgcttctaataaacttagaacacaacatatttcctttgaacctatgtttaagcatgataatgctattctagaacaatgcgtgtatccaagtatgttg 807  Q
    ||||| ||||||| ||| ||||||||||    ||||||||||||||||||||||||||| | ||| |  | |||||  | ||||||||  ||| ||||||    
T  13425364 atatgtttctaatcaacgtagaacacaattggtttcctttgaacctatgtttaagcatggtcatgttcatttagaattacgcgtgtatttaagaatgttg 13425463  T
Q  808 tggacggattttcagtttgtaattacatcactcatacta 846  Q
    |  ||  ||||| |||||||||||| || ||||||||||    
T  13425464 t--acaaatttttagtttgtaattaaattactcatacta 13425500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 52970236 - 52970306
Alignment:
Q  42 ggacacatagaggtggtctctggtataacaaattgccgaaattgttctttaatatgtaccttcatgttgta 112  Q
    |||| |||| ||||||| ||||||| ||||||||| ||||||||||| || | ||| | ||||||||||||    
T  52970236 ggacgcataaaggtggtgtctggtaaaacaaattgtcgaaattgttcctttaaatgcaacttcatgttgta 52970306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 725 - 774
Target Start/End: Original strand, 52970881 - 52970930
Alignment:
Q  725 ttagaacacaacatatttcctttgaacctatgtttaagcatgataatgct 774  Q
    ||||| |||||||| ||||||||||||||||||| |||||| || |||||    
T  52970881 ttagaccacaacatctttcctttgaacctatgttcaagcattattatgct 52970930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 451 - 796
Target Start/End: Original strand, 25010640 - 25010984
Alignment:
Q  451 aaatctcattttggtagaagagataaatctttcttgctatccttaggatcaccttcatattcgaacaacaatctcttccggtgagtgtgaatttcatcca 550  Q
    |||||||||| | ||| |||||| |  ||| |||| ||||||||||||||||||| ||| |||||| |||| ||||||| |||||| |||||||||||||    
T  25010640 aaatctcattctagtaaaagagagatgtctctctttctatccttaggatcacctttatactcgaaccacaacctcttccagtgagtatgaatttcatcca 25010739  T
Q  551 aacggannnnnnntgttgttcttgatcttcttggcaatcgcacatgcacacaacaatccgtaagttatgaaaatgaaacaaccacactaaaatttatccg 650  Q
    |||  |       |||||||| | |||||||| ||||||| |||||||||||  ||||| || || |||||||| || |||||||| | ||| ||||  |    
T  25010740 aacctagggtgg-tgttgttccttatcttcttagcaatcgtacatgcacacagtaatccatatgtgatgaaaattaagcaaccacatttaaacttatttg 25010838  T
Q  651 aaccagacctaattcctcgatcaacctcgtctgcgagaaaatgcatagcgttccttgatatgcttctaataaacttagaacacaacatatttcctttgaa 750  Q
    ||||| ||  || |   |  ||| | | |||| ||||| |||||| | |||||||||||||  ||||||| |||||||| ||||| |  |||||||||||    
T  25010839 aaccacactcaactgtccagtcagctttgtctacgagataatgcaaatcgttccttgatatctttctaatcaacttagaccacaataattttcctttgaa 25010938  T
Q  751 cctatgtttaagcatgataatgctattctagaacaatgcgtgtatc 796  Q
    |||||||||||||||||| |||||  |||||||||||| |||||||    
T  25010939 cctatgtttaagcatgatcatgctcgtctagaacaatgtgtgtatc 25010984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 15892860 - 15892790
Alignment:
Q  42 ggacacatagaggtggtctctggtataacaaattgccgaaattgttctttaatatgtaccttcatgttgta 112  Q
    ||||||||||||||||||||||||| ||||||||| || ||||||||||| ||||| |  |||||||||||    
T  15892860 ggacacatagaggtggtctctggtaaaacaaattgtcggaattgttctttcatatgaaatttcatgttgta 15892790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 571 - 758
Target Start/End: Complemental strand, 8109705 - 8109518
Alignment:
Q  571 cttgatcttcttggcaatcgcacatgcacacaacaatccgtaagttatgaaaatgaaacaaccacactaaaatttatccgaaccagacctaattcctcga 670  Q
    ||||||||||||||||||   ||||| | ||| ||| |||||  | |||||||| ||| ||||||| | | ||||||  | | || ||| |||| |||||    
T  8109705 cttgatcttcttggcaattatacatgaatacaccaacccgtatatgatgaaaattaaataaccacatttagatttatttgtatcacacccaattgctcga 8109606  T
Q  671 tcaacctcgtctgcgagaaaatgcatagcgttccttgatatgcttctaataaacttagaacacaacatatttcctttgaacctatgtt 758  Q
    ||| || ||||||||| | ||| || || ||||||||||||| ||||||  |||||||| |||| ||| |||||||| ||| ||||||    
T  8109605 tcagccacgtctgcgacataatccaaagagttccttgatatgtttctaaccaacttagaccacaccatctttcctttaaacttatgtt 8109518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 19219486 - 19219416
Alignment:
Q  42 ggacacatagaggtggtctctggtataacaaattgccgaaattgttctttaatatgtaccttcatgttgta 112  Q
    |||| |||||||||||||||||||| |||||||||||| |||||||| || | ||| | ||||||||||||    
T  19219486 ggacgcatagaggtggtctctggtaaaacaaattgccggaattgttccttcaaatgcaacttcatgttgta 19219416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 680 - 754
Target Start/End: Complemental strand, 42573551 - 42573477
Alignment:
Q  680 tctgcgagaaaatgcatagcgttccttgatatgcttctaataaacttagaacacaacatatttcctttgaaccta 754  Q
    |||||||| |||||||| | ||||||| ||||||||||||| |||||| | ||||| || |||||||| ||||||    
T  42573551 tctgcgaggaaatgcatggtgttccttaatatgcttctaatcaacttataccacaatatttttcctttaaaccta 42573477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 243 - 353
Target Start/End: Complemental strand, 42573992 - 42573882
Alignment:
Q  243 aatataattcgaacaaccccattaactatacatccatgaaatggaagtacgtctgcatggggcgtgggaccgcacttttcagattatataaaccaaaaca 342  Q
    |||||||| | ||| || ||||| || |||||| |||| |  |||| ||| |||||||||| ||||||||| ||| |||| |||||||||| |  |||||    
T  42573992 aatataatccaaactactccattcacgatacatacatgcagaggaaatacatctgcatgggtcgtgggaccacacgtttcggattatataatctgaaaca 42573893  T
Q  343 tttatatgttg 353  Q
    |||||||||||    
T  42573892 tttatatgttg 42573882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 25009835 - 25009904
Alignment:
Q  43 gacacatagaggtggtctctggtataacaaattgccgaaattgttctttaatatgtaccttcatgttgta 112  Q
    ||||||||||||| |||||||||| |||||| |   ||||||||||||| ||||| | ||||||||||||    
T  25009835 gacacatagaggttgtctctggtaaaacaaactattgaaattgttctttcatatgcatcttcatgttgta 25009904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 41255224 - 41255294
Alignment:
Q  42 ggacacatagaggtggtctctggtataacaaattgccgaaattgttctttaatatgtaccttcatgttgta 112  Q
    |||| |||| ||||||||||||||| ||||||||| || |||||||| || | ||| | ||||||||||||    
T  41255224 ggacgcataaaggtggtctctggtaaaacaaattgtcggaattgttccttcaaatgcaacttcatgttgta 41255294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 725 - 774
Target Start/End: Complemental strand, 19217330 - 19217281
Alignment:
Q  725 ttagaacacaacatatttcctttgaacctatgtttaagcatgataatgct 774  Q
    ||||| |||||||| ||||||||||||||||||| |||||| || |||||    
T  19217330 ttagaccacaacatctttcctttgaacctatgttcaagcattattatgct 19217281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 1e-28; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 491 - 788
Target Start/End: Complemental strand, 11633465 - 11633172
Alignment:
Q  491 ccttaggatcaccttcatattcgaacaacaatctcttccggtgagtgtgaatttcatccaaacggannnnnnntgttgttcttgatcttcttggcaatcg 590  Q
    |||||||| |||| ||||||||||||  ||| ||||||| |||||||   |||||||||||||||         |||||| || ||||||   |||||||    
T  11633465 ccttaggagcaccatcatattcgaactgcaacctcttcccgtgagtgg--atttcatccaaacggttggggg--gttgttttttatcttcaatgcaatcg 11633370  T
Q  591 cacatgcacacaacaatccgtaagttatgaaaatgaaacaaccacactaaaatttatccgaaccagacctaattcctcgatcaacctcgtctgcgagaaa 690  Q
     ||| |||||| ||||| ||||  | |||||||| ||||||||||||| | ||||| ||| | || ||  || | ||||||||||||||| ||||||| |    
T  11633369 tacacgcacacgacaattcgtatatgatgaaaattaaacaaccacacttagatttacccgtatcacacacaactgctcgatcaacctcgtttgcgagata 11633270  T
Q  691 atgcatagcgttccttgatatgcttctaataaacttagaacacaacatatttcctttgaacctatgtttaagcatgataatgctattctagaacaatg 788  Q
    ||||| || |||||||| |||||||||||| ||| |||| |||||||  |||| ||||||| |||||| ||||||||| |||||  ||||||| ||||    
T  11633269 atgcaaagtgttccttgttatgcttctaatcaacatagaccacaacaactttcatttgaacatatgttcaagcatgatcatgctcatctagaataatg 11633172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 564 - 783
Target Start/End: Original strand, 31044051 - 31044269
Alignment:
Q  564 tgttgttcttgatcttcttggcaatcgcacatgcacacaacaatccgtaagttatgaaaatgaaacaaccacactaaaatttatccgaaccagacctaat 663  Q
    ||||||||||||||||| | ||||||| ||| |||||    |||| |||||  |||||||| |||||||||||||   ||||||||| || | | | ||     
T  31044051 tgttgttcttgatcttcattgcaatcgtacacgcacatggaaatctgtaagcgatgaaaattaaacaaccacacttggatttatccgtactacaaccaac 31044150  T
Q  664 tcctcgatcaacctcgtctgcgagaaaatgcatagcgttccttgatatgcttctaataaacttagaacacaacatatttcctttgaacctatgtttaagc 763  Q
    | ||||||||||||||  ||||||| |||||| ||||||||||| |||| ||| ||| ||| |||  |||||||  ||||||||||||||||||| ||||    
T  31044151 tactcgatcaacctcgattgcgagataatgcaaagcgttccttggtatgtttcgaatcaacctagc-cacaacaactttcctttgaacctatgttcaagc 31044249  T
Q  764 atgataatgctattctagaa 783  Q
    ||||| |||||  |||||||    
T  31044250 atgatcatgctcgtctagaa 31044269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 617 - 774
Target Start/End: Original strand, 31048759 - 31048915
Alignment:
Q  617 atgaaaatgaaacaaccacactaaaatttatccgaaccagacctaattcctcgatcaacctcgtctgcgagaaaatgcatagcgttccttgatatgcttc 716  Q
    |||||||| ||||||| |||||   ||||||||| || | | | || | ||||||||||||||  ||| ||| |||||| |||||||||||||||| |||    
T  31048759 atgaaaattaaacaacgacacttggatttatccgtactacaaccaactactcgatcaacctcgattgcaagataatgcaaagcgttccttgatatgtttc 31048858  T
Q  717 taataaacttagaacacaacatatttcctttgaacctatgtttaagcatgataatgct 774  Q
     ||| ||| |||  |||| ||  ||||||||||||||||||| ||||||||| |||||    
T  31048859 gaatcaacctag-ccacatcaactttcctttgaacctatgttcaagcatgatcatgct 31048915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 16491980 - 16492050
Alignment:
Q  42 ggacacatagaggtggtctctggtataacaaattgccgaaattgttctttaatatgtaccttcatgttgta 112  Q
    |||| |||||||||||||||||||| ||||||||  ||||||||||| || ||||| | ||||||||||||    
T  16491980 ggacgcatagaggtggtctctggtaaaacaaattttcgaaattgttcctttatatgcaacttcatgttgta 16492050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 564 - 774
Target Start/End: Original strand, 31059395 - 31059604
Alignment:
Q  564 tgttgttcttgatcttcttggcaatcgcacatgcacacaacaatccgtaagttatgaaaatgaaacaaccacactaaaatttatccgaaccagacctaat 663  Q
    ||||||||||||||||| | ||||| | ||| |||||    |||| |||||  |||||||| |||||||||||||   ||||||||| || | | | |      
T  31059395 tgttgttcttgatcttcattgcaattgtacacgcacatggaaatctgtaagcgatgaaaattaaacaaccacacttgtatttatccgtactacaaccacc 31059494  T
Q  664 tcctcgatcaacctcgtctgcgagaaaatgcatagcgttccttgatatgcttctaataaacttagaacacaacatatttcctttgaacctatgtttaagc 763  Q
    | || |||||||||||  ||| ||| |||||| ||||||||||| |||| ||  ||| ||| |||  |||||||  ||||||||||||||||||| ||||    
T  31059495 tacttgatcaacctcgattgcaagataatgcaaagcgttccttggtatgttttgaatcaacctagc-cacaacaactttcctttgaacctatgttcaagc 31059593  T
Q  764 atgataatgct 774  Q
    ||||| |||||    
T  31059594 atgatcatgct 31059604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 34830527 - 34830597
Alignment:
Q  42 ggacacatagaggtggtctctggtataacaaattgccgaaattgttctttaatatgtaccttcatgttgta 112  Q
    |||| |||||||||||||||||||| |||||||| ||| |||||||| || | ||| | ||||||||||||    
T  34830527 ggacgcatagaggtggtctctggtaaaacaaatttccggaattgttcattcaaatgcaacttcatgttgta 34830597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 25762593 - 25762523
Alignment:
Q  42 ggacacatagaggtggtctctggtataacaaattgccgaaattgttctttaatatgtaccttcatgttgta 112  Q
    |||| |||||||||||||||||||| |||||||||||  |||||||| || | ||| |  |||||||||||    
T  25762593 ggacgcatagaggtggtctctggtaaaacaaattgcctgaattgttccttcaaatgaaaattcatgttgta 25762523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 666 - 774
Target Start/End: Complemental strand, 5960202 - 5960094
Alignment:
Q  666 ctcgatcaacctcgtctgcgagaaaatgcatagcgttccttgatatgcttctaataaacttagaacacaacatatttcctttgaacctatgtttaagcat 765  Q
    |||||||| |||| ||||||||| |||||| |||||| ||||||||| ||| ||| ||| |||| |||||||  |||| |||||| ||||||| ||||||    
T  5960202 ctcgatcagcctcatctgcgagataatgcaaagcgtttcttgatatgtttcgaatcaacctagaccacaacaattttcttttgaatctatgttcaagcat 5960103  T
Q  766 gataatgct 774  Q
    |||||||||    
T  5960102 gataatgct 5960094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 465 - 849
Target Start/End: Original strand, 25369702 - 25370087
Alignment:
Q  465 tagaagagataaatctttcttgctatccttaggatcaccttcatattcgaacaacaatctcttccggtgagtgtgaatttcatccaaacggannnnnnn- 563  Q
    ||||||||||| || | ||| ||||||||||||| |||| ||||  |||||| |||| |||||   |||||| ||||||||||| ||| | |            
T  25369702 tagaagagatatatttgtctggctatccttaggaccaccatcattatcgaactacaacctcttttagtgagtttgaatttcatctaaatgaaaggcgggg 25369801  T
Q  564 tgttgttcttgatcttcttggcaatcgcacatgcacacaacaatccgtaagttatgaaaatgaaacaaccacactaaaatttatccgaaccagacctaat 663  Q
    |||||  |||||||||||||| ||| | ||  ||||||| ||||  ||| || |||||||| || ||| || | | |||||||||   |||| ||| |      
T  25369802 tgttgagcttgatcttcttggaaattgtacgcgcacacaccaatttgtatgtgatgaaaattaagcaatcatatttaaatttatcaataccacacccatc 25369901  T
Q  664 tcctcgatcaacctcgtctgcgagaaaatgcatagcgttccttgatatgcttctaataaacttagaacacaacatatttcctttgaacctatgtttaagc 763  Q
    | ||||| ||||||||| || |||| ||| || || ||||||||| ||| ||||||  |||||||| |||||||  ||||||||||| |||||||  | |    
T  25369902 ttctcgaccaacctcgtttgtgagagaatacaaagtgttccttgacatgtttctaaccaacttagaccacaacacctttcctttgaatctatgttccatc 25370001  T
Q  764 atgataatgctattctagaacaatgcgtgtatccaagtatgttgtggacggattttcagtttgtaattacatcactcatactacta 849  Q
    ||||| |||||  |||  ||||| | |||||||  | ||||||||| ||| ||  ||| ||||||  || ||||| ||||||||||    
T  25370002 atgatcatgcttgtctgaaacaacgagtgtatctgactatgttgtgaacgaatgctcaatttgtacataaatcacccatactacta 25370087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 802 - 869
Target Start/End: Complemental strand, 10549376 - 10549309
Alignment:
Q  802 atgttgtggacggattttcagtttgtaattacatcactcatactactagttagataccttttcaaccg 869  Q
    |||||||| |||||||  ||||||||| ||| |||||||||||||||||| |||| | ||||||||||    
T  10549376 atgttgtgaacggattcccagtttgtacttaaatcactcatactactagtcagatgctttttcaaccg 10549309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 13257283 - 13257193
Alignment:
Q  68 aacaaattgccgaaattgttctttaatatgtaccttcatgttgtagtcattaacattgaactgagccaacattgtgtaacaatatgttagt 158  Q
    ||||||||| ||||| |  ||||||||||| ||||||||||| || |||| |||||||||||| ||   |||| ||||||| |||||||||    
T  13257283 aacaaattggcgaaactactctttaatatgcaccttcatgttataatcatcaacattgaactgggcttgcattatgtaacattatgttagt 13257193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 33804190 - 33804120
Alignment:
Q  42 ggacacatagaggtggtctctggtataacaaattgccgaaattgttctttaatatgtaccttcatgttgta 112  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||| || | ||| | ||||||||||||    
T  33804190 ggacgcatagaggtggtctctggtaaaacaaattgtcggaattgttccttcaaatgcaacttcatgttgta 33804120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 25369386 - 25369463
Alignment:
Q  87 tctttaatatgtaccttcatgttgtagtcattaacattgaactgagccaacattgtgtaacaatatgttagttggaat 164  Q
    ||||||||||| |||||||||||||| |||  | |  ||||||||| |   |||||||||||||||||||||||||||    
T  25369386 tctttaatatgaaccttcatgttgtaatcaacacctatgaactgagtctgaattgtgtaacaatatgttagttggaat 25369463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 774
Target Start/End: Complemental strand, 10549693 - 10549420
Alignment:
Q  498 atcaccttcatattcgaacaacaatctcttccggtgagtgtgaatttcatccaaacggannnnnnntgttgttcttgatcttcttggcaatcgcacatgc 597  Q
    |||||| ||||| ||||||  |||  |||||| ||||||||| ||||||||||||||||       | |||||||||||||||   |||||||||||  |    
T  10549693 atcaccctcatactcgaacctcaacatcttccagtgagtgtggatttcatccaaacggatggggatt-ttgttcttgatcttcaatgcaatcgcacacac 10549595  T
Q  598 acacaacaatccgtaagttatgaaaatgaaacaaccacactaaaatttatccgaaccagacctaattcctcgatcaacctcgtctgcgagaaaatgcata 697  Q
    |||   |||||||||||| ||  || | |||||||||| ||  | |||||||| ||||   | || | ||| |||| | |||||| ||||| |||||| |    
T  10549594 acatggcaatccgtaagtgatcgaactcaaacaaccac-ctgga-tttatccgtaccaagtccaactgctcaatcagcatcgtctacgagataatgcaaa 10549497  T
Q  698 gcgttccttgatatgcttctaataaacttagaacacaacatatttcctttgaacctatgtttaagcatgataatgct 774  Q
     | |||||| ||||| ||| ||| ||| |||| ||||| |  ||||||||||| || |||| |||||||||||||||    
T  10549496 tctttccttaatatgtttcgaatcaacctagaccacaaaagctttcctttgaatctctgttcaagcatgataatgct 10549420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 44710863 - 44710933
Alignment:
Q  42 ggacacatagaggtggtctctggtataacaaattgccgaaattgttctttaatatgtaccttcatgttgta 112  Q
    |||| |||||||||||||||| ||| |||||||||||| ||| |||| || | ||| | ||||||||||||    
T  44710863 ggacgcatagaggtggtctctagtaaaacaaattgccggaatcgttccttcaaatgcaacttcatgttgta 44710933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 725 - 774
Target Start/End: Complemental strand, 33803522 - 33803473
Alignment:
Q  725 ttagaacacaacatatttcctttgaacctatgtttaagcatgataatgct 774  Q
    ||||| |||||||| ||||||||||||||||||| |||||| || |||||    
T  33803522 ttagaccacaacatctttcctttgaacctatgttcaagcattattatgct 33803473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 9e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 661 - 774
Target Start/End: Original strand, 21198953 - 21199066
Alignment:
Q  661 aattcctcgatcaacctcgtctgcgagaaaatgcatagcgttccttgatatgcttctaataaacttagaacacaacatatttcctttgaacctatgttta 760  Q
    |||| ||| |||||||||||| | |||| |||||| || |||| |||||||| ||||||| |||||||| |||||||  ||| | ||||||||||||| |    
T  21198953 aatttctccatcaacctcgtcagagagataatgcaaagtgttctttgatatgtttctaatcaacttagaccacaacaacttttcgttgaacctatgttca 21199052  T
Q  761 agcatgataatgct 774  Q
    |||||||| |||||    
T  21199053 agcatgatcatgct 21199066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 642 - 808
Target Start/End: Complemental strand, 26264657 - 26264492
Alignment:
Q  642 atttatccgaaccagacctaattcctcgatcaacctcgtctgcgagaaaatgcatagcgttccttgatatgcttctaataaacttagaacacaacatatt 741  Q
    ||||||||| |||| | | |||| ||||| ||||||||| ||||||| |||||| || ||||||||||||| ||| ||| ||  |||| ||| ||| | |    
T  26264657 atttatccgtaccacaaccaattgctcgaccaacctcgtttgcgagataatgcaaagtgttccttgatatgtttcgaatcaatctagaccacgaca-act 26264559  T
Q  742 tcctttgaacctatgtttaagcatgataatgctattctagaacaatgcgtgtatccaagtatgttgt 808  Q
    | |||||| |||||||| || |||||| |||||  |||||||  | |||||||||  ||||||||||    
T  26264558 ttctttgagcctatgttcaaacatgatcatgctcgtctagaaggaagcgtgtatcttagtatgttgt 26264492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 617 - 768
Target Start/End: Original strand, 16041148 - 16041299
Alignment:
Q  617 atgaaaatgaaacaaccacactaaaatttatccgaaccagacctaattcctcgatcaacctcgtctgcgagaaaatgcatagcgttccttgatatgcttc 716  Q
    |||||||| || |||||||| | | ||||||||  |||| ||| || | |||||||||||| |  ||| ||| |||| | || ||||||||||| | ||     
T  16041148 atgaaaattaagcaaccacatttagatttatccataccacacccaactgctcgatcaaccttgcttgcaagataatgtaaagtgttccttgataggttta 16041247  T
Q  717 taataaacttagaacacaacatatttcctttgaacctatgtttaagcatgat 768  Q
    |||| || ||| | |||||||| ||||||||||||||||||| || ||||||    
T  16041248 taatcaatttataccacaacatttttcctttgaacctatgttcaatcatgat 16041299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 30214353 - 30214283
Alignment:
Q  42 ggacacatagaggtggtctctggtataacaaattgccgaaattgttctttaatatgtaccttcatgttgta 112  Q
    |||| |||||||||||||||||||| |||||||||||| |||| ||| || | ||| | ||||||||||||    
T  30214353 ggacgcatagaggtggtctctggtaaaacaaattgccggaatttttccttcaaatgcaacttcatgttgta 30214283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 17310267 - 17310337
Alignment:
Q  42 ggacacatagaggtggtctctggtataacaaattgccgaaattgttctttaatatgtaccttcatgttgta 112  Q
    |||| |||||||||||||||| ||| ||||||||| || |||||||| || | ||| | ||||||||||||    
T  17310267 ggacgcatagaggtggtctctagtaaaacaaattgtcggaattgttccttcaaatgcaacttcatgttgta 17310337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 725 - 774
Target Start/End: Original strand, 17310938 - 17310987
Alignment:
Q  725 ttagaacacaacatatttcctttgaacctatgtttaagcatgataatgct 774  Q
    ||||| |||||||| ||||||||||||||||||| |||||| || |||||    
T  17310938 ttagaccacaacatctttcctttgaacctatgttcaagcattattatgct 17310987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 725 - 774
Target Start/End: Complemental strand, 29810107 - 29810058
Alignment:
Q  725 ttagaacacaacatatttcctttgaacctatgtttaagcatgataatgct 774  Q
    ||||| |||||||| ||||||||||||||||||| |||||| || |||||    
T  29810107 ttagaccacaacatctttcctttgaacctatgttcaagcattattatgct 29810058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 756819 - 756749
Alignment:
Q  42 ggacacatagaggtggtctctggtataacaaattgccgaaattgttctttaatatgtaccttcatgttgta 112  Q
    |||| |||||||||| ||||||||| ||||||||| || |||||||| || ||||| | ||||||||||||    
T  756819 ggacgcatagaggtgatctctggtaaaacaaattgtcggaattgttccttcatatgcaacttcatgttgta 756749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 703 - 774
Target Start/End: Complemental strand, 755866 - 755795
Alignment:
Q  703 ccttgatatgcttctaataaacttagaacacaacatatttcctttgaacctatgtttaagcatgataatgct 774  Q
    |||||| ||| ||| ||| |||||||| |||||||  ||||||||||||  ||||| |||||||||||||||    
T  755866 ccttgaaatgtttccaatcaacttagaccacaacacctttcctttgaactgatgttcaagcatgataatgct 755795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 23255612 - 23255566
Alignment:
Q  42 ggacacatagaggtggtctctggtataacaaattgccgaaattgttc 88  Q
    |||| |||||| ||||||||||||| ||||||||| |||||||||||    
T  23255612 ggacgcatagatgtggtctctggtaaaacaaattgtcgaaattgttc 23255566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 12846973 - 12846924
Alignment:
Q  123 ttgaactgagccaacattgtgtaacaatatgttagttggaatacaggaaa 172  Q
    ||||||||||||  |||| | ||||||||||||||||||||| |||||||    
T  12846973 ttgaactgagccggcattctataacaatatgttagttggaatgcaggaaa 12846924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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