View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_20 (Length: 529)
Name: NF17277_high_20
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 5 - 495
Target Start/End: Original strand, 7334930 - 7335420
Alignment:
| Q |
5 |
cttgaacagcttcattcactgtcacttaaatccgtggatgaagctggtgatcctgataaacttatatcgattaatatgtcaaagttggagaagctttcat |
104 |
Q |
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| T |
7334930 |
cttgaacaacttcattcactgacactcaaatcagtggatgaaactggtgatcctaaaaaacttaaatggattaatatgtcaaagctggataatctctcgt |
7335029 |
T |
|
| Q |
105 |
ccctctggttgtatggaaaattagaggaaagactttatatgagcctccttccgaaaaatctcacccatctcaccttgtcagcttcagaactatccgttga |
204 |
Q |
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| T |
7335030 |
ccctccgtttgtttggcaaattagaagacaaaattcgtacaagcctccttcctataaatctcactgaactcaccttgacagcttcacagctatcagttga |
7335129 |
T |
|
| Q |
205 |
tcctatgccagagttgcagaacctgctcaagcttaagtcgttgtgtttatatgctgactcttatgcaaaggaaaagatggtatgtgcatcagaaggtttt |
304 |
Q |
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| T |
7335130 |
tccgatgccacagttgcagaacctgaaaaagcttaagtcattgtgtttttatgctgactcttttatagagaagaggatggtttgtacctcaagaggcttt |
7335229 |
T |
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| Q |
305 |
caacaacttcaagtgctaaggttctggaatttgaagaagctgaaagagtggaatgttaaggaaggagcgatgactagcctcatggaatttgaagtccggt |
404 |
Q |
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| T |
7335230 |
gaacaacttcaagtgctaagattctggaatttggagaggctggaagagtgggatgttaaggaaggagcaatgcctagcctcatggaatttgaagcccggt |
7335329 |
T |
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| Q |
405 |
cctgcagagatttggcatttcccactgggttgaagcatttgaagactattcaaatgataaagttacgtaatatgctaaatcaattcgtgaa |
495 |
Q |
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| T |
7335330 |
cctgcataaacttcgcatttcccagtggattgaagcatgtgaagactattcgaacgataaagttacgtaaaatgaataatccattcgtgaa |
7335420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 6e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 6822635 - 6822774
Alignment:
| Q |
1 |
gaaccttgaacagcttcattcactgtcacttaaatccgtggatgaagctggtgatcctgataaacttatatcgattaatatgtcaaagttggagaagctt |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6822635 |
gaaccttgaacagcttcattcattgtcacttaaatccgtggatgaagctggcgatcctgataaacttatatcgattaatatgtcaaagttggagaagctt |
6822734 |
T |
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| Q |
101 |
tcatccctctggttgtatggaaaattagaggaaagacttt |
140 |
Q |
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| T |
6822735 |
tcatccctccggttgtatggaaaattagaggaaagacttt |
6822774 |
T |
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