View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17277_high_21 (Length: 519)
Name: NF17277_high_21
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_21 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 13 - 501
Target Start/End: Original strand, 39882388 - 39882872
Alignment:
| Q |
13 |
attattctcactcattcttccttccctttctttgcattaatgatcaaagtagtagaaaatcaggtttcccctcttattctaatctctcgtggaacacccc |
112 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
39882388 |
attattctcactcgttcttccttccctttctttgcattaatgatcaaagtagtagaaaatcaagtttcccctcttactctaatctctcgtggaacacccc |
39882487 |
T |
|
| Q |
113 |
taaatccacaaatttctttatacaaaaacctattaattaatagagaattaaaatgagttgccacacccacaccacacgtcatgatcatcaccatattctt |
212 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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|
| T |
39882488 |
taaatccacaaatttccttatacaaaaaactatta----atagagaattaaaatgagttgccacacccacaccacacgtcatgatcatcaccatttcctt |
39882583 |
T |
|
| Q |
213 |
gtgcaagttctaaggtactctaatgtctcgttcttttgcttaattatatacatactccaatttctgagtctaggattattttctttgtagcttgtgttcc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39882584 |
gtgcaagttctaaggtactctaatgtctcgttcttttgcttaattatatacatactccaatttctgagtctaggattattttctttgtagcttgtgttcc |
39882683 |
T |
|
| Q |
313 |
ttttcctttgtgagtacctcatgagctctagagttcggctaggaagaagagctctcaagataagggctctagtcttgaccatgttttaaatatataaaaa |
412 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39882684 |
ttttcctttgtgagtacctcgtgagctctagagttcggctaggaagaagagctctcaagacaagggctctagtcttgaccatgttttaaatatataaaaa |
39882783 |
T |
|
| Q |
413 |
atcttgggcaataacttaacaacgacatttcagatatgggaaattctattcacaatcttatctagggatgttttaccattccttctaag |
501 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
39882784 |
atcttaggcaataatttaacaacgacatttcagatatgggaaattctattcacaatcttaactaggaatgttttaccattccttctaag |
39882872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 3e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 43 - 328
Target Start/End: Complemental strand, 11037171 - 11036888
Alignment:
| Q |
43 |
tttgcattaatgatcaaagtagtagaaaatcaggtttcccctcttattctaatctctcgtggaacacccc-taaatccacaaatttctttatacaaaaac |
141 |
Q |
| |
|
|||| |||||||||| |||||||| |||||| ||||||||||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||||| |
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| T |
11037171 |
tttgtattaatgatcccagtagtaggaaatcaagtttcccctcttactctaatctctcgtggaccaccccctaaatcctcaaatttctttatacaaaaac |
11037072 |
T |
|
| Q |
142 |
ctattaattaatagagaattaaaatgagttgccacacccacaccacacgtcatgatcatcaccatattctt-gtgcaagttctaaggtactctaatgtct |
240 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | | ||| |||||||||||||||||||| | |||| |
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|
| T |
11037071 |
ctattaaa----agagaatgaaaatgagttgccacacccacaccacacgtcatgatcatcaccctttcctttgtgcaagttctaaggtactccattgtcc |
11036976 |
T |
|
| Q |
241 |
cgttcttttgcttaattatatacatactccaatttctgagtctaggattattttctttgtagcttgtgttccttttcctttgtgagta |
328 |
Q |
| |
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| ||||||||||||||| | | |||| |||||||||| | ||||| ||||||||||||| |||||||| |||| |||||||||||||| |
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|
| T |
11036975 |
cattcttttgcttaattgttttcatattccaatttctaattctagcattattttctttgaagcttgtgctcctcttcctttgtgagta |
11036888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 43 - 323
Target Start/End: Complemental strand, 13164193 - 13163915
Alignment:
| Q |
43 |
tttgcattaatgatcaaagtagtagaaaatcaggtttcccctcttattctaatctctcgtggaacacccc-taaatccacaaatttctttatacaaaaac |
141 |
Q |
| |
|
|||| |||||||||| |||||||| |||||| ||||||||||||| ||||||||||| || |||||||| ||||||| ||||||||||||||||||||| |
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|
| T |
13164193 |
tttgtattaatgatcccagtagtaggaaatcaagtttcccctcttactctaatctctcatgaaacaccccctaaatcctcaaatttctttatacaaaaac |
13164094 |
T |
|
| Q |
142 |
ctattaattaatagagaattaaaatgagttgccacacccacaccacacgtcatgatcatcaccatattctt-gtgcaagttctaaggtactctaatgtct |
240 |
Q |
| |
|
||||||| ||| ||| ||||||||||||||||||||||||| ||||||||||||||||| | | ||| |||||||||||||||||||| | |||| |
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|
| T |
13164093 |
ctattaaa----agataatgaaaatgagttgccacacccacaccagacgtcatgatcatcaccctttcctttgtgcaagttctaaggtactccattgtcc |
13163998 |
T |
|
| Q |
241 |
cgttcttttgcttaattatatacatactccaatttctgagtctaggattattttctttgtagcttgtgttccttttcctttgt |
323 |
Q |
| |
|
| ||||||||||||||| | | |||| |||||||||| ||||||| ||||||||||||| |||||||| |||| ||||||||| |
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|
| T |
13163997 |
cattcttttgcttaattgttttcatattccaatttctaagtctagcattattttctttgaagcttgtgctcctcttcctttgt |
13163915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 214 - 376
Target Start/End: Complemental strand, 547783 - 547622
Alignment:
| Q |
214 |
tgcaagttctaaggtactctaatgtctcgttcttttgcttaattatatacatactccaatttctgagtctaggattattttctttgtagcttgtgttcct |
313 |
Q |
| |
|
|||||||||| |||||| |||| || || ||||||||||||||||| | ||||||||||| | | ||| ||||||||||||||||||||||||||||||| |
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|
| T |
547783 |
tgcaagttctgaggtac-ctaaggtgtcattcttttgcttaattattttcatactccaatctttaagtttaggattattttctttgtagcttgtgttcct |
547685 |
T |
|
| Q |
314 |
tttcctttgtgagtacctcatgagctctagagttcggctaggaagaagagctctcaagataag |
376 |
Q |
| |
|
||||||||||||| ||||| || | ||||||||| |||||||||||||||||| |||| |||| |
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|
| T |
547684 |
tttcctttgtgagaacctcgtgggttctagagtttggctaggaagaagagctcccaaggtaag |
547622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 211 - 379
Target Start/End: Complemental strand, 2270005 - 2269840
Alignment:
| Q |
211 |
ttgtgcaagttctaaggtactctaatgtctcgttcttttgcttaattatatacatactccaatttctgagtcta-ggattattttctttgtagcttgtgt |
309 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| ||||||| ||||||||| | ||||||||||||||| |||||| ||||||||||||||| ||||||| |
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|
| T |
2270005 |
ttgtacaagttctaaggtaccctaatgtct--ttctttt-cttaattattttcatactccaatttctaagtctatggattattttctttgaagcttgtcc |
2269909 |
T |
|
| Q |
310 |
tccttttcctttgtgagtacctcatgagctctagagttcggctaggaagaagagctctcaagataagggc |
379 |
Q |
| |
|
||||||||||| ||||||||||| || | ||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
2269908 |
tccttttcctt-gtgagtacctcgtgggttctagagttcggctaggaagaagagctctcaaggtaagggc |
2269840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 221 - 366
Target Start/End: Original strand, 28201092 - 28201237
Alignment:
| Q |
221 |
tctaaggtactctaatgtctcgttcttttgcttaattatatacatactccaatttctgagtctaggattattttctttgtagcttgtgttccttttcctt |
320 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||||||||| | || |||||||||||| ||| |||||||||||| ||||||||||||||||||||| ||| |
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|
| T |
28201092 |
tctaagatactccgatgtctcattcttttgcttaattattttcacactccaatttctaagtttaggattattttatttgtagcttgtgttcctttttctt |
28201191 |
T |
|
| Q |
321 |
tgtgagtacctcatgagctctagagttcggctaggaagaagagctc |
366 |
Q |
| |
|
|||||||| ||| || | |||||||||||||||||||||||||| |
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|
| T |
28201192 |
tgtgagtatctcgtggcttttagagttcggctaggaagaagagctc |
28201237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 40729890 - 40729782
Alignment:
| Q |
218 |
agttctaaggtactctaatgtctcgttcttttgcttaattatatacatactccaatttctgagtctaggattattttctttgtagcttgtgttccttttc |
317 |
Q |
| |
|
|||||||| ||||||||||||||| ||| ||| ||||||||| | ||||| ||||||||| ||||||| ||||||||||||| |||||||| ||| ||| |
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|
| T |
40729890 |
agttctaaagtactctaatgtctcattcattt-cttaattattttcataccccaatttctaagtctagcattattttctttgaagcttgtgctcc-gttc |
40729793 |
T |
|
| Q |
318 |
ctttgtgagta |
328 |
Q |
| |
|
||||||||||| |
|
|
| T |
40729792 |
ctttgtgagta |
40729782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 401
Target Start/End: Original strand, 22403718 - 22403778
Alignment:
| Q |
341 |
tagagttcggctaggaagaagagctctcaagataagggctctagtcttgaccatgttttaa |
401 |
Q |
| |
|
|||||||||||||||||||| || |||| || |||||||||||||||| |||||| ||||| |
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|
| T |
22403718 |
tagagttcggctaggaagaaaagatctcgaggtaagggctctagtctttaccatgatttaa |
22403778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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