View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17277_high_23 (Length: 509)
Name: NF17277_high_23
Description: NF17277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17277_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 17 - 498
Target Start/End: Original strand, 35364222 - 35364703
Alignment:
| Q |
17 |
ataaccatgcatttaatgatagcaaggacgggaaatctttgttgattggggttaagcaatcgcttaacctaataagctttattaataagagataagagaa |
116 |
Q |
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| T |
35364222 |
ataaccatgcatttaatgatagcaaggacgggaaatctttgttgattggggttaagcaatcgcttaacctaataagctttattaataagagataagagaa |
35364321 |
T |
|
| Q |
117 |
gtgaagagataagatatggtaacacataatagtagacatattgtaacttaattaatccctcagagaaatatctagaaaactaacagtacaatgtatgaat |
216 |
Q |
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| T |
35364322 |
gagaagagataagatatggtaacacatactagtagacatattgtaacttaattaatccctcagagaaatatctagaaaactaatagtacaatgcatgaat |
35364421 |
T |
|
| Q |
217 |
caaaccatgggatccatggccaggacagtgctaagattcatagggtacatatactcattggagccattcatgatttgttggactatgattctgcaagctt |
316 |
Q |
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| T |
35364422 |
caaaccatgggatccatggccagaacagtgctaagattcatagggtacatatactcattggagccattcaagatttgttggactatgattctgcaagctt |
35364521 |
T |
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| Q |
317 |
tttcagatggatggattgaatcccaaaatgcatagaggtctcgattttggcacaagtttgcaagaggtgtgcataatttaatcccattgtatgggccata |
416 |
Q |
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| T |
35364522 |
tttcagatggatggattgaatcccaaaatgcatagaggtctcgattttggcacaagtttgcaagaggtgtgcataatttaatcccattgtatgggccata |
35364621 |
T |
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| Q |
417 |
ctcacaacaagctttctttgatgtaacaaatcctgttcaccaataattcgttgtaagttagaaaataattacgaaacccttt |
498 |
Q |
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| T |
35364622 |
ctcacaacaagctttctttgatgtaacaaatcctgttcaccaataattcgttgtaagttagaaaataattatgaaacccttt |
35364703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 171 - 453
Target Start/End: Original strand, 35376140 - 35376422
Alignment:
| Q |
171 |
atccctcagagaaatatctagaaaactaacagtacaatgtatgaatcaaaccatgggatccatggccaggacagtgctaagattcatagggtacatatac |
270 |
Q |
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|||||| |||||||| |||| |||||||| ||| ||||| ||||||||||| |||||||||||||| || |||||||| ||||||||||||||||||||| |
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| T |
35376140 |
atccctgagagaaatgtctaaaaaactaatagtgcaatgcatgaatcaaactatgggatccatggcgagaacagtgcttagattcatagggtacatatac |
35376239 |
T |
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| Q |
271 |
tcattggagccattcatgatttgttggactatgattctgcaagctttttcagatggatggattgaatcccaaaatgcatagaggtctcgattttggcaca |
370 |
Q |
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| T |
35376240 |
tcattggagccagtcaagatctgttgcactatgattctgctagctttttcagatggatggaatggatcccaaaatgcataaaggtctcgattttggcaca |
35376339 |
T |
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| Q |
371 |
agtttgcaagaggtgtgcataatttaatcccattgtatgggccatactcacaacaagctttctttgatgtaacaaatcctgtt |
453 |
Q |
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| T |
35376340 |
agtttgaaaggggtgtgcatagtccaatcccattgtaagggccttgtccacaacaagctatctttgatgtaacaaatcctgtt |
35376422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 213 - 453
Target Start/End: Original strand, 35357627 - 35357867
Alignment:
| Q |
213 |
gaatcaaaccatgggatccatggccaggacagtgctaagattcatagggtacatatactcattggagccattcatgatttgttggactatgattctgcaa |
312 |
Q |
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|||||||||||||| ||||||||| || |||||||||||||||||||||| ||||||| ||||| ||| | | || ||||||||||||||||||| | |
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| T |
35357627 |
gaatcaaaccatggaatccatggcgagaacagtgctaagattcatagggttcatatacaggttggatccaatgaacatctgttggactatgattctgcta |
35357726 |
T |
|
| Q |
313 |
gctttttcagatggatggattgaatcccaaaatgcatagaggtctcgattttggcacaagtttgcaagaggtgtgcataatttaatcccattgtatgggc |
412 |
Q |
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| T |
35357727 |
gctttttcagatggatgaaatgcatcccaaaatgcataaaggtttcgatttgggcacaattttgaaataggtgtacacagtccaatcccgttgaatcgcc |
35357826 |
T |
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| Q |
413 |
catactcacaacaagctttctttgatgtaacaaatcctgtt |
453 |
Q |
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| | |||||||||| | ||||| |||||||||||||||| |
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| T |
35357827 |
cttgaccacaacaagcatcctttgctgtaacaaatcctgtt |
35357867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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